Array 1 2705-557 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJRH01000303.1 Streptococcus sp. GMD6S Contig_303, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2704 36 100.0 30 .................................... TACAACAAGACAAAGGACGTAGGGACATTG 2638 36 100.0 30 .................................... TAACACGAGAGTTAAATAATTGCTTTGGTT 2572 36 100.0 30 .................................... TGGTGACACTACAATCAGCAGATGGGTCAC 2506 36 100.0 30 .................................... GTCCTTGTGAAACAGCTCCATCAGCAGCTT 2440 36 100.0 30 .................................... ATAAAACCGTTACAATTCCATCTGCAATAA 2374 36 100.0 30 .................................... ATCGATGAAAGACTGGCTCAGCTTGCGTCT 2308 36 100.0 30 .................................... ATGACCGTTTTAATTGGGCGATGGACATTG 2242 36 100.0 30 .................................... TTGGTCCTCAATTGGCTGAACTGGAAATGC 2176 36 100.0 30 .................................... TAAATCCTGCGAAGCCTATAATCGACCTGC 2110 36 100.0 30 .................................... AGCCATGTTATTCATGCCATCCAAAGCCGA 2044 36 100.0 30 .................................... TTATCCATGATACTGAAGCGTTCCATCACG 1978 36 100.0 30 .................................... GCCACCACATCTATAAAAGATTTCGTTCCT 1912 36 100.0 30 .................................... GTAATTTTGTAAGTTTCTTATCCGGTCTTT 1846 36 100.0 30 .................................... ATCTTCGATTGTTCTCATTGCTCCATAAAC 1780 36 100.0 30 .................................... TTCAGAGCGACCGGACGGGTTGTATGGTCA 1714 36 100.0 30 .................................... AAATTAAGTTAGAGATAGGCAATGTACCTA 1648 36 100.0 30 .................................... CGGTCATACGTGAAGCATTGCCAAGATTGA 1582 36 100.0 30 .................................... CTTTCAAAATTCCTAGGTTCTTCTCATACG 1516 36 100.0 30 .................................... CAGGCGCCTATTACACTCATAACCATCAAG 1450 36 100.0 30 .................................... TCCTTTCTTCTAAATTTGCTTTTTACATTT 1384 36 100.0 30 .................................... AGAAAATTGGAAATTTAGATAAATTTTATG 1318 36 100.0 30 .................................... TAGACCTCAACCAATCGCTGATTGAGACGC 1252 36 100.0 30 .................................... CCTGTACCATGGTTATCCGTCGGATGATGT 1186 36 100.0 30 .................................... AGTTGCTGATGTGTTTTTCATATCCAGCCA 1120 36 100.0 30 .................................... TAAATCTAAAAATTAGAAAAACCACCAAGC 1054 36 100.0 30 .................................... TAAAATATCGAGAAACCTGGTATTTCATGG 988 36 100.0 30 .................................... AAGATAGCCACAATAGCATCCCAAATGCTT 922 36 100.0 30 .................................... AGGTGATACAACAGGAATCTGAGGCGCTGG 856 36 100.0 30 .................................... TCAAAAGAGAGTCGCTCTTGGTACCAAGTA 790 36 100.0 30 .................................... TTATGTGGCAAGCGCTAACTACTACAGATA 724 36 100.0 30 .................................... CCGTGAAATTAGTAGTGTTCAAAGGTGCTA 658 36 100.0 30 .................................... ATGCTTGTATTCGCTTTATGGAAATCCTCA 592 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TCTGGC # Right flank : ACCTCATGCTTGAAGATGGCCGATTGGCTGAAAAAGAAAGTTTCAACATCGGGCCTGACGGATTGATCACTACAAAATAATTTTTTAAAAATAGAAAGGAAATTTTCTAAAATATTGTTCGAATTGTAACCGCAGGCTCAGGCTTGCGGGCTTTCTTGTTTGCAATAATAAAAGCAGTGACGGAAATCACTGCTTATCAGCTGTAGCAAATTCATAAAGTTTTTCTGCTGTGAGAAGTGCCATTTTGTCCATGCTTGTTTTTCCTTTTCTGAGGTCAGAAACGGTAGTCCATGGCACACCGGCACCTTGTGAAATAGCAGATGTAGAAATAGAACTATTAAGTAATTCTTGAATAACTTTTCTCATATTTTTCTTTACCTCAATTTTTATCTTAATCATATTATATAACGGAGAACCGAGATGTCAAGCGTTTTGATAAATTATTTCTAAATATTTTCGCCCCAAACTTGCCCCCAAAAACTTATTTTTTTATATTTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 8641-10139 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJRH01000284.1 Streptococcus sp. GMD6S Contig_284, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 8641 28 100.0 33 ............................ TACCACTGCTCTTGCGATATTCTTTGCCAATCT 8702 28 96.4 33 ............T............... CGTGACTTTCCGTTTGGTGACTGATTATAGCCT 8763 28 96.4 33 A........................... CGGTGCAGTCAGCATCCTTGTCATTTTGGCAGG 8824 28 85.7 33 T...........G.A........A.... TAACACGATTGACATTCCCATATTGAGTCAAAT 8885 28 96.4 33 ....................A....... CACAATTCACTTGTACGAACGGGGTGGATATCC 8946 28 92.9 33 ............G.A............. CAAGACTCTTACCATCTTCAAGATGTCTGATAT 9007 28 92.9 33 A....................A...... CAAGACCAGGATAAGCAAATCAAGGCACTTGAA 9068 28 96.4 33 ..........................T. TACGATTGAAGATAATAAGAAAGAAACAAGTAA 9129 28 89.3 33 ............T.T...A......... TGGGTCTAAGAAAATGACCTTTTGAATGGTTGT 9190 28 85.7 33 ............G...T...AT...... CATTTGCTTCTGACCGTTGAAATAGAAACCGTG 9251 28 92.9 33 ............G.A............. TGGGTATAGTAAAGAGGGCTTTTTAATGCCTTT 9312 28 92.9 33 ..............T..T.......... TGAGGGCTTGGTCATCGGTAAGAATGACGGTAG 9373 28 100.0 33 ............................ CATGATTATGACTATCAATGACCATGAGGGTGA 9434 28 96.4 33 ............T............... TACGCAAGACGTTTCAAGTGCTGCAATCCTTAC 9495 28 100.0 33 ............................ TGATAGAAGCCGATTGGGTTTGACTGCTCCACT 9556 28 96.4 33 ............G............... TTAAGTTCACTTCTTAAAAAAGATGAAGAATTG 9617 28 100.0 33 ............................ CAGTATTTTTAGCAACTTTAGCTTATCAATGGA 9678 28 96.4 37 .....................A...... TATCCTGGATACAGGAATTGAACTGGCTTTCATGTTT 9743 28 92.9 33 A...........G............... TGTAGACACATCTACAAGCTGGACAATCCCTCT 9804 28 96.4 33 ............G............... TGTAGACACATCCACAAGCTGGACAATCCCTCT 9865 28 96.4 33 ............G............... TACAGATGCTTGTATTCGCTTTATGGAAGTTAT 9926 28 92.9 33 ............G.A............. CTGATTATCTAGCCCCATCTCATAGATGGCCCA 9987 28 100.0 33 ............................ TCCACCAATTTTTCCTTTGTAGCCATCAAGCAA 10048 28 92.9 33 ............G........A...... TATCCACGTTTACTCTATCCTTAAACAAGTCAA 10109 28 92.9 0 .....................A....A. | G,T,C [10126,10132,10136] ========== ====== ====== ====== ============================ ===================================== ================== 25 28 94.9 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : TGCTGGTAGTGCTCAAACCAAGGATTATCAACAATTTTTAGATAACATCTATACTGGTAGCCGAATGAAATTTCGAGTGGTGCTTAATCCAGTTATTTCCTTAGTATCACCAGATAATCTTAAAAGAGGTATTGTAAAACCTCATATTACGAGTGAACATCAGATGAATTATCTAGTAGAACGCTCTGACAAAAATGGATTCTCACTGATAAAAGAAGATTTTTCAATCGTTGAACGTGGTTATGAGGTGTTTAAAAAAGCTGTTAAACCTATCCGATTGATAAAGGTTGTTTATGAAGGGGTCTTAACAGTTAGTGATGCAGATCTTTTTAAGAAGCTTTTGACTGAAGGAATGGGAAAGAAAAAAGCATACGGTTTTGGTTTAATGACCGTTATTCCATTGGGAAACGAATCATGGTAAAAAAAAGTGGAACGAAGAAAACATCTCTGCGAGAACTTCCTAAAATAAGTGATCGTGTCAGCTTTATTTACGTAGAACA # Right flank : ATAAAATGAGATATAAGAAAATCTCCCTATTGAAAACTGGTAAATTAGAGATAGGAGTGTTTTTTTATAGGAAAAAAGCATATTTTGTGTCAAAGAAGACATCTTACATAACAAAGGAGAAGACAAGTAAATCGAATGAAGTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTGTAGCAGAGTATAAGAAAATTTGTCTTGCATCTGTTTTCTTAGAGATTTTCAGAACTAAATGCTCAACATTTTTTGATTGGAAAAACGAGACTAAAATCCTTAGCTCAGATTATCGTTTCTATCGGTCTCGCCCAAAACTTTGCGGCCCTCAAAGCCTTGGT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2299-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJRH01000010.1 Streptococcus sp. GMD6S Contig_010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2298 36 100.0 30 .................................... CCATTGTTGAGGACGAAGTGTTCAATCAAG 2232 36 100.0 30 .................................... TTCCACAACTGAGTAACCGATAAAAAAGCA 2166 36 100.0 30 .................................... AGTTCTTGACTGTGATATTTGCTCCTGAAC 2100 36 100.0 30 .................................... CTCGTTCCCATTAGATGTTTCAAACACCTT 2034 36 100.0 30 .................................... AACATTGATATTTCAACCTTTCTAAGCATT 1968 36 100.0 30 .................................... ATCACCCCTTTCATGGTGTAAAATAGGGTA 1902 36 100.0 30 .................................... CGCCCGCTGGGAAGAAGACCCACGCATCAT 1836 36 100.0 30 .................................... CCCAGTCATAATTATCCCAACCAAAAACTC 1770 36 100.0 30 .................................... CATTATCAAATAATCTTAGTCAGATTGAAC 1704 36 100.0 30 .................................... AACTTCGTGCTAAAGGTTACATCAAGGGTA 1638 36 100.0 30 .................................... CTGTTTCAGACGATGGAGATATTTCAACAG 1572 36 100.0 30 .................................... TTCTATTTCTATAATCATTATAACACAATT 1506 36 100.0 30 .................................... TAACAGGTTTACTTGATGGATTGGCGCTGG 1440 36 100.0 30 .................................... AAAGCCCCATCTTTACTCACCTCCTTTCTA 1374 36 100.0 29 .................................... AGAGTATCATACGAGCCTTGGGATCAAAA 1309 36 100.0 30 .................................... TAGCCCGTCACTTTATTATATCAAACGCAC 1243 36 100.0 30 .................................... CTTTTGCTAGCTTGTACGATATTTCACTAA 1177 36 100.0 30 .................................... CCATCATCAGAATAAGTAAAATCCTGAAAG 1111 36 100.0 29 .................................... ACTGAAAAAGCTGTCAAGCTTACTGCTCC 1046 36 100.0 30 .................................... GATAAGCTCATCCACATTGTTAAAACTTCC 980 36 100.0 30 .................................... CTAAAGCATGGTACGGGGATAAGTTTTCTG 914 36 100.0 30 .................................... AACGCATTAGATTTCTGGAAGATGAACTGT 848 36 100.0 30 .................................... CATATTCCTATCATTTAGAAGTTAAACGTA 782 36 100.0 30 .................................... GAGAACATCGTGGAGGAAGGAGAATAACAT 716 36 100.0 30 .................................... TTAAGGGCGCTGGTATGACACCAGAGATAA 650 36 100.0 30 .................................... AATGTGTCAACTCATTCACAAGCGGGATAC 584 36 100.0 30 .................................... TGAAGGATGATGGCAAATGGTACTACCTAA 518 36 100.0 30 .................................... GGTTTTTAAATTGTACTTTTCCATAAAGAC 452 36 100.0 31 .................................... AAGCGATATAGATAATGCTGAGCAGATCAGG 385 36 100.0 30 .................................... TTTTGGTAAAAAGCACTCTGAAGAAACAAA 319 36 100.0 30 .................................... CTTTCCTATAATGTAAACCAACATTTAGGC 253 36 100.0 30 .................................... ACCCTGACGGGTCTTATCCAAAAGAAGAAT 187 36 100.0 30 .................................... AAATCAGCAGTCTAACAATTAAGTTTCTTA 121 36 100.0 30 .................................... TGTTTCCATAAAATTCTCTTTGTTCTGGCC 55 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTTTCTATCCTATAGTGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTGACTAATCATAATGATTCATTATATATTGTTTTGTTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCGCTAGAATTCATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTCTATCTGTAGAAGATCAAGTGGCATTAAAAATTTTGAATAATTTGTATCAATATGAAATGAAAAAAAAATTCTGTATTGGATCAATCAATCCTATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG # Right flank : CTACAACAAGACAAAGGACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //