Array 1 1599-1353 **** Predicted by CRISPRDetect 2.4 *** >NZ_FEYS01000014.1 Neisseria meningitidis strain 2842STDY5881350, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 1598 30 93.3 46 ...........................G.C TTGTACGGTTTCGGTTTTTTTTTTGAGGTTTCGGGCAACTTCTAAA 1522 30 100.0 38 .............................. CCTTGGGATAACGGCAATATTCAAAGGTTATAAAAGAC 1454 30 96.7 42 ..........................T... ACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATG 1382 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 97.5 42 CCGTCATTCCCGCGCAGGCGGGAATCCAGA # Left flank : GTCATTCCCGCGCAGGCGGGAATCTAGGTTTGTCGGTGCGGAAACTTATCGGGTAAAACGGTTTCTTTAGATTTTGCGTTCTAGATTCCCACTTTCGCGGGAATGACGAAGAGTTGCGGGAATGATGGAAAGCTATGGGAATAACGAAGGGTTAAAGTAATCACGGGATGGTGTTCGCGGGAATATAAATTTAAATAATTCAAAAGGGTGTTATATGCAGCCTGCGGTTTATATTTTAGCAAGCCAACGTAATGGCACGTTATACATTGGCGTTACATCTGATTTGGTGCAACGTATTTACCAACATAGGGAACATTTGATTGAGGGATTTACATCACGGTACAACGTTACTATGCTGGTTTGGTATGAACTGCATCCTACGATGGAGAGCGCAATTACTCGGGAAAAACAGTTGAAGAAATGGAACAGGGCTTGGAAATTGCAACTGATTGAAGAAAATAATGTTTCTTGGCAGGATTTATGGTTTGATATTATTTAGC # Right flank : CTGTTGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTTAAAATGGGGAGGTAAGCTTTTCAATCAGCAATTCGGCGGGCGCGGAATCGGGCGGTTTACCGAACCTCGGCGTTCGCGGCGCGCCGCCCTGTCCCGTGAAGGCAAACTCAAGGAATAAAAGATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGGGGGGGGGCGCAGGCGCAAACATATTCATACGCTATTGTAATGAACAGTCAAAAGCTGCCCGAGGTAAGGAATGGGAGCTCCCAAAGCAAGCACCGCCAAGCTACCTTTATTGCACAATTTAGTGGACCAAAAAAAAACTCTATTTTCTCATTCAATAATACCGATAACGTTGTTGCTAAAAAAGACGGTACTGTCGTTTTCGGCACAGCGACCTACCTGCCGCCCTACGGCAAGGTTTC # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCATTCCCGCGCAGGCGGGAATCCAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 1 465-2150 **** Predicted by CRISPRDetect 2.4 *** >NZ_FEYS01000018.1 Neisseria meningitidis strain 2842STDY5881350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 465 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 531 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 597 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 663 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 729 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 795 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 861 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 927 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 993 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 1059 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 1125 36 97.2 30 ............A....................... ATAGAACCTATGGCTGCTACGGCGTTGACA 1191 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 1257 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA 1323 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 1389 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 1455 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 1521 36 100.0 30 .................................... CATCAAATCATCCGCCGCGATTCGATCGCA 1587 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 1653 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 1719 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 1785 36 100.0 30 .................................... ACCAAGATATATCAAAATTGTAGATGAAAA 1851 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG 1917 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 1983 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 2049 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 2115 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCTCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //