Array 1 147-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZSM01000022.1 Photobacterium angustum strain ATCC 33975 CFSAN029435_contig0021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 146 29 100.0 32 ............................. CGCATGGTTAACGGTAGATACCGCTATTTTTA 85 29 100.0 33 ............................. ACTATGGTCTATTTTTTTAATACGTGACTTGGT 23 23 79.3 0 .......................------ | ========== ====== ====== ====== ============================= ================================= ================== 3 29 93.1 33 GTGTTCCCCGTACTCTCGGGGATGAACCG # Left flank : GTGGCTCAAGAGCACTATTAGAATCGGTTTCTAATAGTGGGCATAAAGCGGCAATTTGTCCAACTCTAATGTCTGAATGGAAGATGCACCGCTCATTGTTTGCTCGAAAGTGGTTGGCTTCTATGATCGCAAAGAAACAAGTTAACTTTATAAAACCGCAGAGTACAACAACTGACCTTATCAAAAATCATTTAGAGAATGCGAAATATATTTCTATTGCTAGTAAAGATGCTCATCTGATTGATGCAGCTATGATTTCAGATAAAATTATTGCTTCAAATGACGATACTGCTAGAGGTGTATTCTGTGAGTTATCAGAATGCTATAGAGGTATAAGAACTATAAAGTGGTTTAATGCTATAACCGATAGAGAGTTTGTCTCAAATTTTCTATCATCAGATTGCTTTGTTCCTGAAAAATACTACGTAGTTCCTACTAAAGTTTAAAGTAGACAAAGTGTTTAAAACGTTATTCAGGTTGAGTTAGTTAGGTTTTATGGT # Right flank : T # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACTCTCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16616-16116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZSM01000045.1 Photobacterium angustum strain ATCC 33975 CFSAN029435_contig0044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16615 29 93.1 15 ..........................TG. ATGAATAAGAAAGCC Deletion [16572] 16571 29 96.6 32 ............................G CTCTGATTGATATGATTGCACTTCCTCATGCC 16510 29 96.6 32 ............................A CACTAAAATCAGCGTTAATCAGTAGATTAGGA 16449 29 100.0 32 ............................. GTAGTAGTTACCTATAGGACGACCAATCTTAT 16388 29 82.8 32 ..........T.T.T........G....C TTACCAGGAATCAGCTTGATTGAGGCTTCAGT 16327 29 82.8 32 ..........TG..TA.......G..... ATGCAAATAAAACTTCTATCCAAATCGGTTGG 16266 29 93.1 32 ..........T.T................ CATGACTTTATAAACAGGATAAAATTCATCAT 16205 29 72.4 32 ........T.TCTT.A.......G....G CAAAAAGCGTAACAAACAAAAGCGAGGCGGAA 16144 29 72.4 0 .C......TTT.T..A...........TA | ========== ====== ====== ====== ============================= ================================ ================== 9 29 87.8 30 GTGTTCCCCGCACCCTCGGGGATAAACCT # Left flank : | # Right flank : ACTAAATTTACCCGTTCAATATCGGGGTTTTGATTAGATGTTTTAGGTTTAAGTCTTATTATGTTTTGTTTTTATAATTTTTTGTGTGTAAAAAGCACTCATAAAGTGTTGAACAAAATAAGAAGATAAATGGCTTTAAAGCTCAAATTTTATGAGGGCTTATACAAAATTAACATTCATAAATAACTAATATTAAATAACTTAATTTTGATCTATTTTTTTCTAATTCAATAGCGTGTTGGTTTAAGCCTTAAGTGTATTCTTTTACATGAAAGTTAGAATACTTATTTGCAAGGTTGTTAAGTGCCCATTGAGCTGTAGGACTATGACGAATAAATATGAAATTATTTGAGACTATTTCTCTGAAACTCCCAGAGATAAACGATGTAAATTGCAAAATTCACTTGGCTGTATGGAACGGAAAAGATAATCCACTTGATATTTTCTTAGCTGGAAATTTTGAAGAATGGCAACGCTGGCAATCTAAGCGTAACTTCGAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:-1.5, 6:0.25, 7:-0.18, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCTCGGGGATAAACCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACCAGCGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.70,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 176938-176313 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZSM01000007.1 Photobacterium angustum strain ATCC 33975 CFSAN029435_contig0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 176937 29 79.3 17 ...............T.......CT.TTT TTTAATACGTGACTTAT Deletion [176892] 176891 29 96.6 32 ...............T............. GTTAGCCAGGTAACGGTTTCAAGCTGGATTAA 176830 29 96.6 32 ...............T............. CTGATTTAATCAATTGCCAGTGCAAGATTTGT 176769 29 96.6 32 ........T.................... AAAGCATCTGATTTATAAACATCTTTGTTGAA 176708 29 100.0 32 ............................. CAAACCACTAAAAACATATGATGATTTGAAAG 176647 29 96.6 32 .......T..................... TGTCTTATGTTATGCCAAAAGTATGGTATTCG 176586 29 100.0 32 ............................. TGCCATATGGGGATCGCTAATTCTTGAGGCGA 176525 29 93.1 32 .............C.......G....... ATTATAAATACGATTATACAAATATGAGTTAA 176464 29 93.1 32 .............C.....A......... CTTCTTGCTTTTGCTCTGTTTCAGTCACAGCT 176403 29 86.2 33 ..A.........TC.......G....... AAAAAATACAACTTTTTAGAGTGGGAAGATCGC 176341 28 89.7 0 .......................-..G.A | T [176316] ========== ====== ====== ====== ============================= ================================= ================== 11 29 93.4 31 GTGTTCCCCGTACTCACGGGGATGAACCG # Left flank : | # Right flank : CAATTTTCATGGTAAATTGTGTCGTTATATAAGTTCAAACTATTAGGGCTTTTAGGTTTGAAATTATTAACATAACTTATGAAAAACAGTGATTGTTAAATGCTAAATAAGTTTTCACTCACAATACTTTTCCTAATATAAAACAGGCCTTTCAATGACTATTTGAAAGTAATAACTGTCCAATTATTGGTTAGTTCAAATAAACAAAGCGATCTCTCACCTAGATCGCCTTGTTTTCTAAAACCGCTTTCCAAACCTGCTGGTATTATCCTTCCATTCTTCAACGGCCGAACGTAACCAACGTAGGGGCATCAATGTAATTGGCTCAGGGAAACCACGTGTTTGTCGCCACTTATAAATAGTTGCTCGACTTGTGATTTGAAACATCTCTAGTACTTCGACATGACTAATCAAAAGATGCGTTGATTGCTCATTAAGTTCAGCATAAGTCTTTGCTGGCTGCGATGAATCAGGTAGTTGCTTTTCTTGTTTACTTTTAT # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:-0.11, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACTCACGGGGATGAACCG # Alternate repeat : GTGTTCCCCGTACTCTCGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //