Array 1 98045-100086 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKV01000005.1 Salmonella sp. S093_02758 NODE_5_length_281437_cov_134.383, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 98045 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 98106 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 98167 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98228 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98289 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98350 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98411 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98472 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98533 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98594 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98655 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98716 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98777 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 98838 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98899 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98960 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 99021 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 99082 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 99143 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99204 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99265 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99326 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99387 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99448 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99509 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99571 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99632 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99693 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99754 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99815 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99876 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99937 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99998 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 100059 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116219-117023 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKV01000005.1 Salmonella sp. S093_02758 NODE_5_length_281437_cov_134.383, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 116219 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116280 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116341 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116402 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116463 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116525 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 116628 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 116689 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 116750 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 116811 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 116872 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 116933 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 116994 29 96.6 0 A............................ | A [117020] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //