Array 1 17571-17200 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUQ01000033.1 Pseudomonas kirkiae strain P28C NODE_33_length_56870_cov_13.818656, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17570 28 100.0 32 ............................ ACAGCGACGCCGCGGGCGTTCATGGTCGGGCG 17510 28 100.0 32 ............................ ATATAGGGATGACTGTTCAGCGCGCTATTGAG 17450 28 100.0 32 ............................ ACTACCGCCTGCCCCCATCCGAAGGCTCCGGC 17390 28 100.0 32 ............................ GTCGTCGAAGCGCTGAACGCACCGATCTGAAC 17330 28 100.0 32 ............................ TGGACAGAGACCACGCAAGAGGCTGGCGACCG 17270 28 92.9 15 ........................C..C CCCAGTGGACGTACC Deletion [17228] 17227 28 82.1 0 ..........A.....C.G..AA..... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 29 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGGCGCTGGATCGCCTGCTGGCGCTGAACTGGCTCACGGGCATGCGCGACCACGTGCGCCTGGGCGAGTTGGCCCCGGTGCCGGCAGGGGTGCGTTATCGCCACGTCAGCCGTGTGCAGGTGGACAGCAACCCGGAGCGCGCCCGCCGACGCCTTGCCAAGCGTCACGGCATCAGCGAGGAAGAAGCCCGCCAGCGCATCCCGGACAGCGCCGCCAAACGCTGCGACCTACCCTTCGTGATCCTTCGCAGCAATGGCAACGGGCAACCCTTTCGACTGTTTATCCGCCATGGCCCGTTACTCGACATCCCAACCCACGGCCCCTTCGGCAGTTACGGCCTAAGCGCCACCAGCACCATCCCCTGGTTCTGACCCTTTTTTCAGGCAACGCTGGAGCCCTTGTAAAATCAAGCAGTTACAAGCGGCTTCAGAAAAAGGGTAAAGCCTGTGGAAAATGGCTTTTTCTCTTTGGAAACGGATAGTTATTGAGGAAACTGGCTA # Right flank : CTGATGATGGCTATACCGGCCACGGCGGGCCTTATTGCCGCTCCAGTGCCTCCAGCTCCCGGACAGCCTCTTCCAGCTTGCGAGTCCTTTTCTCGATCTTGCCGGGGTCGCCGCCCTGCTGGGCTTCACGCAGGTCGGCCTGGCGTTCCTGGACTTCGGCCTGCACCGCCTCGTAGTCGGCCTGGCGCTCTTGCCGCAGGCCTTCTTCGGTACAGTGCTCGCGCACGGCGCGCAGGGCCTTTTCCAGGCCGTGGGTGCGGCCCTCGTTGCCGTGCGCCCTGGCTTCCTCTAGCTGGCCGAGGATCGCGCGCTCCTTGTCGGCACAGCTCTGCGGTGCGGCCTGTATGGCCGTGCAGAGCAGGAGGATGGGGGACAACAGCAGCGAACGGGGTAGCGATATCATTTCCGGAACCCTTCCTGTGAGTTTCCGGCAGCCTAACACTCGCGGTGGCCGCTGGGCCTCCGTAGAATTGCGCTCTTTTTCCCGGAGCCTGCCGATG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 45407-45734 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUQ01000002.1 Pseudomonas kirkiae strain P28C NODE_2_length_190489_cov_14.200970, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 45407 28 100.0 32 ............................ TGTCCGCGCCCTGAGTACGTCTGAACTGGCAG 45467 28 100.0 32 ............................ TATCACAACCACCAGAACCTGCAAACCAAGGC 45527 28 100.0 32 ............................ AGAAACAACGAAGCCCGCACTAGGCGGGCTTC 45587 28 100.0 32 ............................ TGAAGGCGCGACGCTACATGCCGAAGCGGTAG 45647 28 89.3 32 .....T......A...A........... AGCCACCCTCGAAGTCCATGTTGCAGGCGTTG 45707 28 75.0 0 .C.........CAC.......CTG.... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 94.0 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCGCCCCGCCCGTCGATGGCAAGGCCAACGCCCATCTGCTGGCATTCCTGGCCAAGGCCTTCGGCGTGGCGAAGAGCCAGGTGAGCCTGGAGTGCGGCGACTCGAACCGGCAGAAGCGCCTGCGCATCCACGCCCCACGACAGTTGCCGGACCTGCCGGGCCTGGTGCACCCGGAGAGCTGACCCACCGACCGGGCCATTCAAAGAGTGGCCTGTCATAGCCGTGCCATACATGCCGGGATTCCCGTATAGGCAGGCATCCCGGCAATACACTCACACCACTCACCTGTGCCCCCGCCTGCGCGGGGACGACGGATACTGCGCCCAGGCAAACATTTCTGCCCCCGGGTTCAGCCCGTACCCTGCCGCTGACCCTTTTTCCAGAGCCTGTATCAGGCCATTTAAAATCAATAACTTACAGACAGACCAGAAAAATGGGTAAACACAGTAAAACAAGGCATGGCGCTTTCCCAATCAAGCAGTTAGCGTAGCGATGCTCTA # Right flank : AGCCGCGTCCTTTCCGTCCCGTGCTTGCTGCTGGGGGCATCGCTCTTTAGACTTGCGCCCTTCCTCCGATTCAATAGCAGGGTCGCAATGCCCACTGCCTTTCCCGAAGACTCCATCGGCCTGGTCCAACCCCAGGTATTGCACTTCAGCGAGCCGCTGGCGCTGGCCTGTGGCCGCAACCTGAACGAATACGATCTGATCGTCGAAACCTACGGCGAGCTGAACGCCGCGCGCAGCAATGCCGTACTGATCTGCCACGCCCTTTCCGGCCACCACCACGCCGCCGGCTACCACAGCGCGGAAGACCGCAAGCCGGGCTGGTGGGACACCTGCATCGGCCCCGGCAAGGCCATCGACACCAACCGCTTCTTCGTCGTCAGCCTGAACAACCTCGGCGGCTGCAACGGCTCCACCGGCCCGAGCAGCGTCAACCCCGCCACTGGCAGGCCCTATGGCGCGGACTTCCCGGTGGTCACCGTGGAAGACTGGGTACACAGCCA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9712-10229 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUQ01000034.1 Pseudomonas kirkiae strain P28C NODE_34_length_54752_cov_13.808970, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9712 29 100.0 32 ............................. ATGCCGCCTACTATCGTCGATGGCCTCACTCT 9773 29 100.0 32 ............................. CGGATCGCCGAGAGCTTCGGCCTGGAAGGTAA 9834 29 100.0 32 ............................. CGGCATGGCTCCCTTGAGGCGGCATGGGATGC 9895 29 100.0 33 ............................. TCCATAGGGTCAGGGCCTCCCTGGCGAAGCGCG 9957 29 100.0 32 ............................. GCGATCAGTTTGATGGCCTGCTTGGCACATTC 10018 29 100.0 32 ............................. CGGCGTGACCGAACACGGCCGAGTCACGGGGC 10079 29 100.0 32 ............................. CAGGCCCAGGTGAAGGGGACTGATAGCTACAC 10140 29 100.0 32 ............................. TGATTTTAAAGAATCCCCACTTCCTGATATTT 10201 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 100.0 32 CTGTTCCCCGCGGATGCGGGGATGAACCG # Left flank : CGGCCGTATCATTCCGTTGATCGAGGAAGTGCTGTCCGCAGGTGGCATTTCTCCTCCAGAGGCTCCACCTGAATCCGTGCCTCCGGCTATTCCAAATCCGGAAAGCTCTGGCGATGCCGGGCATCGGAGCCGCTGATGGCCTTCCTTGTCGTCGTTACCGAGAACGTTCCACCGCGCTTGCGCGGACGGATGGCCATATGGCTGCTGGAGGTGCGTGCCGGCGTCTATGTCGGCGATGTTTCCCGGCGAACGCGGGAAATGATCTGGCAGCACCTGGAGGCAGGGCACGAAGACGGCAACGCGGTTATGGCCTGGGCCAGCAATACCGAGTCCGGGTATGACTTCCAGACCCTGGGCGTCAATCGCCGTGAGCCTATCGATTACGATGGACTCCGATTGGTCGCTTTCAGCCCCCAGAAAACCCCTGATCTTTAAACACGGAAATCGGTAGATTTTTATGGGTGTATTTTCTCTATATGGATCAATTGGTTATGATTGGT # Right flank : GTTGAGCAGGGTGGTTTTACCAGCGCCGGCCTCGCTGTTCCCCGCATCTGCAGGTACCGAGGTTCGTGCAGAGACGTTTCCGGCTATACGTGTTCCTCCGAGCCTTGCGCATTGCGGGCCTACATACTTCATGCCTGGCGGCGTAACACGGCATCCCCTCCATTGCGGTTCTGATCGACACTTACCCCTGCCCACCGAGCTCCCCGATCCGCCGGTCCTTGTCCTGCCACAGGGCGCTGACCCACTCCTGCATGCGCTGGCGGAATTGCTCGTCGTTCTGGTAGTCGCCCTGCCACAGCGAGGGTTCCAGCGGCAGGCTGCGGATGTCGACGATGACGCGCGGCACCTGGCCGCTGATCAGTTCCCAGAAGCCGGGCACGCGCTTGCCGGGGTAGACCACCGTGACGTCGAGGATGGCGTCGAGTTGTTCGCCCAGGGTGGCGAGCACGAAGGCCACGCCGCCGGCCTTGGGTTTGAGCAGGTGGCGGTAGGGCGATTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGGATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //