Array 1 64851-65339 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZFO01000005.1 Clostridium acetireducens DSM 10703 CLAC_contig000005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 64851 30 100.0 36 .............................. AGAGTTTTTAAAATCCAAAGAATTTAAATTTGAAGC 64917 30 100.0 35 .............................. ATGTAAACTTCGTCAAATATATAATTTTCACAATC 64982 30 100.0 35 .............................. AAAAACGTAGGTAAGTTTTTACTGCTTGAAGGTGG 65047 30 100.0 34 .............................. TTATAGGTACTGTAACTTCTCTAGTTTCTCCTAT 65111 30 100.0 36 .............................. TAGATCACATTTAATGCTACAGGTTGCGACTGTTCA 65177 30 100.0 36 .............................. GTCATTTCTGCTATCCATTCTTCACATTTTTTATTT 65243 30 100.0 37 .............................. ACAGGGAGAAAATAAATAACATTGAGGGGATGTTCCC 65310 30 93.3 0 .................T.......T.... | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 99.2 36 GTTGAACAATAACATGAGATGTATTGAAAT # Left flank : CTATGAAAAGACAGTAGAGATTAGAGAATTAATATATTCATATACTAAATTGAAAGTAATTAAAGATGATGTTATAGATGCTCTATGTCTTGCTGTTACAGGAATGCTTGGATATAAAAACGGATTTAAAACTATACCAGAAAATCCCATGAAAGATAGCAGGGGAATGTTTATGCAGATGATTTATGCTGGGCATGTTTGAATAATAACATAATATAATGAACACATATACTATAAAAATAAGCAAATAAGCCACAACAGCAAGTAAAATTATAAGTAAATATTTAAAGTTGAAGCATTTAATGGAACAATTTGAAATTAATTTTACCAACCGATTTTTAAGTAAAAACCCCTATAAAGTTTGCAAAATCAATGGCTTAGAGGGTGTTACATAAGGAAAAACTGAAAAAGCGAAAACGGTTGGGAAAAAGTCAAAGGAATCCTTTCATTTCAATGGTTTTAGAGGTATAATGAAATTAAGTAATGGCTATTTTACTATG # Right flank : TATATGTTCTAAAAATACACAGTTACCATATAAAGCCGTTGAACAAATAACATTAATTACATAACAAAAGCAATAGACTATTCTCAAAGCTAATTGAATAATCTATTGCTTTTATTTAGCTTTTCTTACATTCTTTTATTAAATATTCTAATGAAAGAAGAATATACATCTTGCAAAGGAAACAACTTTCTCAATATGGGGCACAACATTATATCCTAGAACAATGATTGAAACTGAAATGTAAAATAAAAGCCTTAGGAGATTAATCTCTTAGGGATTTTTTATGTGAAAATTTATTGCTTAAATAGTAGGGGCTAGAATGTATTATATTTGATGAATCCATAGAAAAGTATGTATAATATATAGATAAGGGAGGGCTTATAAAATGGATATTTTTCAAGTTTTCTATGATTCAAGAGATGAAGAAAAATCTATAAAAATGGCTAGATATATGAAGAATAAATTTCCATTTCTGGGCATAGCTAAGCCTGAGAGAATGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 8815-2519 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZFO01000031.1 Clostridium acetireducens DSM 10703 CLAC_contig000031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 8814 30 100.0 35 .............................. ATTATAACTGGGTATGGATTTAATAAGCTAGTTTC 8749 30 100.0 37 .............................. ATATAAATGCTAAGTGCCTTAAAGAAGGAATTATAGG 8682 30 100.0 37 .............................. TACTCTTCCGTAAAGCTTTCTAACTGCTCTATATCTT 8615 30 100.0 36 .............................. AAAGCTACTCAATATGAAAATTCAGTAGGAGAAGTT 8549 30 100.0 37 .............................. GGAGAAAAGACAGAGGTAGTAGAAAAAAGAGTATTTG 8482 30 100.0 37 .............................. TGTATTTCTTTTTTATTACCTTCTCTAAGTTGTATTA 8415 30 100.0 36 .............................. ACTGTTCCAGGTCCATTCCATTCAGATAAAGGATAC 8349 30 100.0 36 .............................. GCAAATTAGTTATAAACTTCTTCATCTGTTCTGTCT 8283 30 100.0 36 .............................. AATGGTATTGCTTATGATGATGATAAACAAGTGACA 8217 30 100.0 36 .............................. TAGTTGGGAGAGTGATATAATGCCTAACTTATTTCC 8151 30 100.0 37 .............................. GTTAGATACACGTTTGAAACAGATTCTTTTTCTGCAT 8084 30 100.0 37 .............................. GTTAAATCTTTTAATTGATTAAACAATTCATTATCTT 8017 30 100.0 36 .............................. TTATATTGTTTGCTATCTATAAAATAGGTTCTGTTA 7951 30 100.0 37 .............................. AATGTAGGTATGGATTGTCATAATTTTTATCCTATTG 7884 30 100.0 37 .............................. TTTTTTCTATCTGTATAACCACCTCCGTTGATAGATA 7817 30 100.0 38 .............................. TGAAAATGGTGGTATTTTAAAAACCCCATTAACCTTTA 7749 30 100.0 38 .............................. TATTGATTTATTATATTTTTCCAATAATATCTAGGAAA 7681 30 100.0 35 .............................. AAATTACTAAATCAAAGGATATAGAAGATATAAAA 7616 30 100.0 35 .............................. GAATTATAATTGTCTTCTAGTTCTAGCATCTCTTC 7551 30 100.0 41 .............................. GTTTAATATCTAGCTTATGTCCATCTCTACCATGTACACCT 7480 30 100.0 36 .............................. TGGAAATGAATGTAATTTGGTATTATGCCAAGGCGG 7414 30 100.0 39 .............................. TATCTCCTTCAGCACCTATTTCTCTTGGTTTTTGATTGC 7345 30 100.0 38 .............................. CAAGAACTAAAAGAAAATAGCTATAGGATAGTAGGAGA 7277 30 100.0 39 .............................. TTCTTCAATTCCTTCTAAAATATTCTTATTACTTTGATA 7208 30 100.0 39 .............................. GAGTTGAAATTTTCCTCTAATTCTAACATCTTTTCAAAA 7139 30 100.0 36 .............................. TATTTAATTCTCCTATTGCCCCCCAAGACATTCCGT 7073 30 100.0 38 .............................. TTTTTTTCTCTTTCCAAACTATGTCTTATGTTCGTTCT 7005 30 100.0 35 .............................. ACAACGATAAAAGGGAGAAAAAAAAGAACTTCCTA 6940 30 100.0 35 .............................. ATATATATAATGCAATAAGTCAAGCTAAAGCGGAT 6875 30 100.0 38 .............................. GGGAAAACGCTACAACAATTAGAGTGGGCAAATAAAGT 6807 30 100.0 38 .............................. CTATAAAGTATTCTGCAAATACACATACCTCGGTATCC 6739 30 100.0 37 .............................. ACTCTACTTTGTAATGCCATTTGTGCATAAGTATCGT 6672 30 100.0 36 .............................. TTTATTGAAATTATATCTTTATGATGAAGATATTTA 6606 30 100.0 38 .............................. TAAGCTAATGTAAATAAATACAAAATATAAAATTACTT 6538 30 100.0 38 .............................. ATACAAAACCATCACTTTTGCCATCTGACATATTAGAC 6470 30 100.0 37 .............................. TTTGTTGAGTTTGTATCATCCTCAACAAATTTTTTCA 6403 30 100.0 36 .............................. ACTATTTTTTAAAATAGCTTGAGCGTTACCAAAAGC 6337 30 100.0 37 .............................. TTTTTTATTGCATATTCTTTTATTTTTTTGTTTTTCT 6270 30 100.0 37 .............................. GTGGGAAAATTAGAAATGAAATCATAGGAAGTTTCGA 6203 30 100.0 37 .............................. TATTTTGAAGCTGCACCATGAATCTTTGAATTAAAAA 6136 30 100.0 35 .............................. GTTTTTCTCTATCTACTTCAAATCCAACTGCTTCA 6071 30 100.0 37 .............................. TCCTTATTCTTAACCAGAACAATTATAGAATATATGA 6004 30 100.0 39 .............................. TAAAATACTATGGGTATGATATACAAATGGCTATATATG 5935 30 100.0 37 .............................. ACATACAATGATGATTATGATTTAATAGGATATAAAT 5868 30 100.0 37 .............................. ACGTTTGTAAGGTCTTTTAATTGTGGTAGCAATGTAA 5801 30 100.0 35 .............................. TTTATAAACCACTAACACTAAACATATATACATAA 5736 30 100.0 37 .............................. CCTAATTCTGAATGATATTGTTCACCAAAAATAACTC 5669 30 100.0 36 .............................. TTCCACCTTGTATATACTTCCCACAAATATATACAT 5603 30 100.0 38 .............................. ATTCTAAAGCCGTAGGATGATGGTCAAGTAGTGTGAAT 5535 30 100.0 37 .............................. ATATTGATGCTATCTAATAAATTTAATTTTATTATTG 5468 30 100.0 36 .............................. AAATTACCCTTCATGTTAAAAATCAGTTTTCAACTT 5402 30 100.0 36 .............................. GAGCTATGAAAATTTACTATAGTTTTACAATTATCA 5336 30 100.0 36 .............................. AATTGTTTTTTTCCATTTTTGTATTCCTCCTAATTT 5270 30 100.0 36 .............................. TAAATATACACACGGTGGTGAACTGTGGAAAAAAGC 5204 30 100.0 37 .............................. TTAATTTCATAATTAATAGAATTATAAAAATTATTTT 5137 30 100.0 36 .............................. TAGTACATAATAGAACATACATTTGTATAACTGCTA 5071 30 100.0 35 .............................. TAAACTAATAATATCTAATTAAAAACTTTAACTGC 5006 30 100.0 37 .............................. AAAAAATTTTTAGATGATTGTTTTTATAAATGTAATT 4939 30 100.0 34 .............................. TCGTCTATACAATCACAATCAATTAACAATAAAC 4875 30 100.0 35 .............................. TTCTCTACAACATCTATATCCTTTCTTTTCAATGC 4810 30 100.0 37 .............................. CATAAATATTTTTGGAGGTTTGGAGGTTAAGCAATGC 4743 30 100.0 37 .............................. AGAGCAAAAATTAAAAATGTTATTAATTTTGCTAAAG 4676 30 100.0 37 .............................. TTCTCTAGTTCTGCAAATTCTGTGAAGTCTCCTCTTG 4609 30 100.0 38 .............................. ATGTAAGAATACAACTCTTTCCCTTCTATTGTTAAATT 4541 30 100.0 37 .............................. AAGATACTGAAGAGGTAAAATATAATAACCTTACAAA 4474 30 100.0 38 .............................. TTGTTCTTTTTAATATTTCATGTTTTCCTCTATAATAA 4406 30 100.0 34 .............................. AGATTTAGATTCTAGTTCATCTAATCTATTTTGG 4342 30 100.0 36 .............................. CTGGATACCTAAATGCAATTTAAAACATAGAAAGCG 4276 30 100.0 37 .............................. ATTAACAAGTCACACGCATAGAAATCGTCTTTATTAA 4209 30 100.0 38 .............................. TATAAATAACTCTCTTTTGTTTCTAACCATTTTGCAAC 4141 30 100.0 36 .............................. ATATTTTGTATTTTCCATTGTTATTCTTCTTAATTA 4075 30 100.0 36 .............................. TAGATTATGATGATATGAAGACAATTTATTCAGTTC 4009 30 100.0 36 .............................. ATTTAAAATTCTATTGGAAACAATGTAAAATATGTT 3943 30 100.0 35 .............................. ATTTTTTCATATGTATATGATATATTAGTATATAC 3878 30 100.0 37 .............................. TCTTCAAATACTTCGTTAATAAGCTTTAATTTTTCTT 3811 30 100.0 36 .............................. AATCAATTTTAAAATAGTGCCAGGTTCACGGGTGGG 3745 30 100.0 38 .............................. ACTTCTCCGCTTTCCCAGTCAACTTCATTCGCATGTTC 3677 30 100.0 36 .............................. TTTTTCTTTTTCATTTCTTCAATTAAAGCGTCTCTA 3611 30 100.0 36 .............................. TCTGTTTTACCTTGTTGTTTTAACTTGATTATTTTT 3545 30 100.0 37 .............................. TTGAAATTCTCTCATCTTTTCCTTTCCTACGATATTT 3478 30 100.0 35 .............................. CGTCATTTTGTCCATCTCCATTACGACAACTTGTC 3413 30 100.0 36 .............................. TATTCTCCCATTAGAAAAAGAAGATGGAAATAACTT 3347 30 100.0 37 .............................. CCAGGACTTTTAGATTTAGCAAGTGCTGGAGAATTAG 3280 30 100.0 37 .............................. TTCCAACAAATTGATTTTTGTCACCACACCAATATCT 3213 30 100.0 37 .............................. ACAGTTTACGTATTGCACAACGATGTTAGGGAGAAAA 3146 30 100.0 37 .............................. GCATTTTGTAAATCTGCACCACTAGCATAAACCGTAC 3079 30 100.0 35 .............................. ATAAACTTTCTTGACTCTCCATTAAACTATGCTGT 3014 30 100.0 37 .............................. CTTGAAAGACAGAAACATAATGCAGAAACTCTTACAG 2947 30 100.0 37 .............................. CAAATTACAAATATTCTACCACACTAAAATAGTACAC 2880 30 100.0 37 .............................. CAAATTACAAATATTCTACCACACTAAAATAGTACAC 2813 30 100.0 37 .............................. TTCCTCCCTTAATAACCACCATACTGGTGGATTTAAA 2746 30 100.0 36 .............................. CCTGTAATATTATCTATTATATTATTTAGCTTAAAC 2680 30 100.0 35 .............................. TAAACCTTGTAAACCGTTGATATCACTATGTTTGC 2615 30 93.3 37 ............TA................ AGGGTAACGACATTTAAGTAAAGGCATAAATAAGCAG 2548 30 73.3 0 ................AG.TT.T..T.C.T | ========== ====== ====== ====== ============================== ========================================= ================== 95 30 99.6 37 ATTTTTAGAATACCTATAAGGAATTGAAAC # Left flank : TTAGAAATTTATAAATTACAAAAATATATAACAGAAAATGAAGAATACAAAGGTTTTGTAGCTAAATGGTAATTTTATAAAAAAGGTGATAAAATGTTTGTAATATTAGTATATGATTTTGAACAAAAAAGAGTAGGAAGAGCTTTAAAGACCTGTAGAAAATACTTAACATGGGTACAAAATTCAGTATTTGAAGGAGAAATAGGAGAAGCAAACTTAAAAAAGTTAAAGATGGAATTAAATAAACTTATGGATAAGTCTACAGATTCTGTAATAATATATAGTTTTCAAAGCACAAAATATTCTAAAAGAGAAGTACTTGGTGTATCAAAAAATTCTCAAGAATTCATATTATAAATAAAAGTCCACCCCCAATAGTGCAAAAAACTCTGGGGATGGACTTTTTTATAAATTAAGCTATTCCAATGTTTCTATAAAAATGTTATAATTTTTATAGAAAGTAAAAAAATAAAAAGCTTTATATTTCAATGGCAAAATGG # Right flank : AACTGAAACGACAAGAAATTAAAGTGCAAAATAAATTCCAAAAGAGTTTGTTTTGCACTTTTTTATCAAAATCCTTTTACTAAAATCATGAGTTAAAATTTAAAACTATAATTTCTTTATTTTAATTTAACTTCAAAAGTGAAAGGTTCAAAATGTAATTCATAATTTTCAGAAGAACCTTCAAAATGTAGCTTTAAATTATCGCCTTTAGGATCTACTTGTTTAAATAAAACTATACCTTCTTCTTTAACTCCAGGCATTATTTCATCGTTAATTTGTTTATAGTTACCTTGGTAATTTTCACCTTCTTGAATTTGTTTAGTTCCCTGAACTAACTTACTATTAAAAGTATAGAAATTTATCTTATCTTTAGTATTATTAGTTACAGTTACATAAGCTCTAGTTTCATCCTTAGCTATTTCAACTTTATTAAGTTTTAACACATATCCATTTTGATTCGTTTCTTTATTAATATCTATAGTTTTAAGTGCTGGAGCAAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTTAGAATACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 2 26520-18313 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZFO01000031.1 Clostridium acetireducens DSM 10703 CLAC_contig000031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 26519 30 100.0 35 .............................. CTGGTGGAAAAAAAGAAAAACATGCAACTGGAGGA 26454 30 100.0 38 .............................. ATAGAACGTTCCTCTAAAAGCTATGACACATATTTAAT 26386 30 100.0 37 .............................. AGAGTATTAGAATTAGTATAGTCAACTATATCCTTCA 26319 30 100.0 37 .............................. GAGACAGAGCTTCAAGCTAAGATTCAAGAATTAAAGA 26252 30 100.0 37 .............................. TATGATCCATTTAAAAAAGAGAAAAATAAATGCACAA 26185 30 100.0 36 .............................. TTTGCAGAAGAACCAGGAGGAGAAGCAGTTATTCCT 26119 30 100.0 36 .............................. AATTAGGGCAATTCTCTTTAACTATATGAATTCTTC 26053 30 100.0 36 .............................. TTGTTTCCTGTTCTGCATAGCTTGTACCATTTGTAG 25987 30 100.0 37 .............................. CACAGGTAAAAGTACTAGGAAAAGAAACAGAGAATAA 25920 30 100.0 38 .............................. CGGAAGAGTATAAGCAAGTTTTTAAAATGGTAAAATAG 25852 30 100.0 38 .............................. ACAATGTTCTTTGAAGATATAGAGCAGTTAGAAAGCTT 25784 30 100.0 38 .............................. CTCAACTAACTAACTTACAACTGTATATAATATACATA 25716 30 100.0 37 .............................. TAAATAATAAAATAAACAACTACATAATGAATCTAGA 25649 30 100.0 39 .............................. AGTAAAAATTAAAAAATAAGGAGTGTATAAAAATGAAAA 25580 30 100.0 38 .............................. TAACTATGTAAATGTAAAATATATGTGATTTAGTAAGT 25512 30 100.0 36 .............................. TTAAATAAAGGTATTAGATATAATTTTGTAAAAATA 25446 30 100.0 36 .............................. TCATTTCTAAGAAAAGCATATCTATAGCATCATTAA 25380 30 100.0 38 .............................. TGGCTTTTAATTCACTTAATTCTTTTTCCATATTTTCA 25312 30 100.0 38 .............................. AGAGGTGTTTTGTATGAAAAATATAAATACAATATCTG 25244 30 100.0 35 .............................. CTCTAGGGAATAAGTATATTAATTTATTCCCTAGA 25179 30 100.0 36 .............................. TTTACAACAAATAGGTCAAAAATTTAGAGAAATTGA 25113 30 100.0 37 .............................. TATTGCAAAAACTCAAAGTGGTACAAGTAATGCTATT 25046 30 100.0 37 .............................. ATCATATTAAATAACCTTAAATTGAATTTAAGTAAGT 24979 30 100.0 38 .............................. TAACTATCTCATTTTTTGGATACCTCATATTAGGATTG 24911 30 100.0 37 .............................. TAAAAAATTAAACAGAAAAGTATTAATATTTAAACCT 24844 30 100.0 38 .............................. AAATATAATGATGAAAAATTATATGAGATAAATACTAC 24776 30 100.0 36 .............................. CCTTTTCCAAATACTATAATATCTTCAAATATTCCT 24710 30 100.0 36 .............................. TCCAATTCAACATATGATCCCTATGTATTTCTACCC 24644 30 100.0 37 .............................. CAGGACTTAAATGTGAAACAGATGAAATAGTGCATCA 24577 30 100.0 36 .............................. CAGAACACGCGGTGTCCTTCCCAATTTTGTTTTAAC 24511 30 100.0 38 .............................. AATACAAAGTATGCGAAAAAGGAGTAGAGTTACAAAAC 24443 30 100.0 37 .............................. TAGTACATCCAAGGACTAAAAGTGTAGATAATTTTAA 24376 30 100.0 38 .............................. CCAACTGCATAATTTTTAGGTAACGTGTAGCCAAGGGC 24308 30 100.0 37 .............................. TTGTTAGTACAATGAAAATTTGTATTAATATTTATAA 24241 30 100.0 35 .............................. TATGAAAACGCAGAAGAAAACGCAGAAAACAATAA 24176 30 100.0 37 .............................. GGTAGGTGGTATAAATGAATAAGATATTAGTTGTTAA 24109 30 100.0 38 .............................. TCTATTTCTTGCAACTGTATAGCTTCTTCATCTATACA 24041 30 100.0 36 .............................. AGGATCTCAAACAACTTTTGACGTCTTCATAGCCCA 23975 30 100.0 38 .............................. CTAGTTGCCATCCTTCTTTGGCAACTGTAAATACCACC 23907 30 100.0 36 .............................. AGAAAAAAGTTAGGTAAAGCTAAAAAATTAATAAAA 23841 30 100.0 38 .............................. TAAAACCATTCTTACCATTTCCTCTACCCATTACAATT 23773 30 100.0 37 .............................. ACATCACGATATTTCAAAGCGAAATTTTGCCATAACC 23706 30 100.0 38 .............................. GTTTTTTCTGCTCTTTCCACTAATTTAGTTGCTTTATC 23638 30 100.0 38 .............................. TACTTTTTAAGATTTTCTCCAACTAAGACGGAATATCC 23570 30 100.0 38 .............................. ATTTTTTGAAGTTGTACGCCTTTTGGTGTTACTTTTAA 23502 30 100.0 36 .............................. CCTATTTTCCCTTCTCCTACTGCATAACGTAAACCA 23436 30 100.0 36 .............................. CTACCTCCAAAAATTGATAAAACTATCTTTCTATTT 23370 30 100.0 36 .............................. CTGATTACATAATTTATAAGTAACGTATAGCCAAGA 23304 30 100.0 36 .............................. TAATTGTTATGTAAATAACATAATAAATTTTTAAAG 23238 30 100.0 38 .............................. TTCTTTGAGCAATTTGTTTGTCTGTAAACAAACTACCT 23170 30 100.0 36 .............................. AAAGCTATGAATGGAGTGTCATTCGGAAAAGTTAGA 23104 30 100.0 35 .............................. TTTTGTATATGAAACAAGAATCAATGAAGAATGGG 23039 30 100.0 37 .............................. TCTGTATTAAATAATACCTTTACATTTGTATTATTAA 22972 30 100.0 37 .............................. CAATTATATTTTCATAATATTGTAAACATTTTGCTGT 22905 30 100.0 37 .............................. TAAAATTAACAACATCTTGCCAGACTAAATTTTCTAT 22838 30 100.0 37 .............................. TCAAGTGGCTTTAACAATATATCTGGTTCCTTTCCAA 22771 30 100.0 38 .............................. TTTAAAAAAATGGACAGATTTAAAAGGTAATATAGTAC 22703 30 100.0 37 .............................. CTTTAGTAGTTCCTGCAATTTGGGGCAATTGTGTAGT 22636 30 100.0 37 .............................. AACATAAGTCCTACAGTTCTAACAGGAAGTTTCTTTT 22569 30 100.0 38 .............................. TCAATTACATCTATTTTATATTCATTTTTTTTTATATC 22501 30 100.0 37 .............................. ATAAAAGTATAGACCTTGAACTTTTAGATGAAACAAT 22434 30 100.0 36 .............................. TTTTGTCTGATGTAAAAATTAGGTATAATGTTACTA 22368 30 100.0 35 .............................. TTGAACATTGTATGTTATATGAGATTGTAATATAC 22303 30 100.0 36 .............................. GTTCCCTATCTTTTGAATGACATTAGTTATGTAATT 22237 30 100.0 38 .............................. TATCTCTATCGTCAAGTTGATATTTTACATACTCTAAA 22169 30 100.0 37 .............................. TTTTCTAGGGAATGTTTTAAGTTCCCTAGAATAGTTT 22102 30 100.0 37 .............................. TAATAACTCCTAGAAAAGATACAGTTGTAAATTCAGC 22035 30 100.0 38 .............................. CTTCATTTTGAATAATAGTTGCTAAGTTATCGTTTATA 21967 30 100.0 37 .............................. TTGTAAAGGTAGAAGGCAAAGCTAAAAAGGAACAAAT 21900 30 100.0 38 .............................. TACGTACAAGCTAAACTATATGAAAACGCAGAAGAAAA 21832 30 100.0 40 .............................. AGGGGTGTATTTATAAATGAAAAATATAAAAGAAATAAAA 21762 30 100.0 37 .............................. TATTCCCTAAGAATTTCACTAACAAAACAACTATTGT 21695 30 100.0 37 .............................. AGAGTAAATAATAGACAAAATGTTATAGAAACTAAGA 21628 30 100.0 38 .............................. ACAGGTAGGTTGGATGCTGAACGGTTGAAAAGTCCATA 21560 30 100.0 38 .............................. GAAGTCGAAAAATCTTCACTAAACAAAACTTCAAGAAA 21492 30 100.0 37 .............................. AAGCTTTAACATCTGCTGACAATTATATAATAACATA 21425 30 100.0 37 .............................. GTAGTAGAAGGTTGGAAGTATATTTTAATTCATAATA 21358 30 100.0 37 .............................. ATTCATAATAAAGATTTAGTGAAATATCAAAATGATA 21291 30 100.0 38 .............................. TATTTATAACACTTATAGTATTAAGGTTGAAAATTCTA 21223 30 100.0 38 .............................. AAATGACTTGAACTGGCACAACTTAATATAACAGTTAA 21155 30 100.0 37 .............................. ATAATTATTTATATAGGCTCAAAGGCTCAATTATTTT 21088 30 100.0 37 .............................. AAAGAAATTCAAATTCTCCAAAGTTTTCCTGTAATAA 21021 30 100.0 36 .............................. AACAAAATACAGCTTAAAAATATATAAAGGAAGTAT 20955 30 100.0 37 .............................. TAAAATTCTACTAATAGATGTAGCAAATAAAAGTAGT 20888 30 100.0 38 .............................. TTTTCAGGAAGCGGTACAAGTGAAATGGAATATACATT 20820 30 100.0 38 .............................. TAAAATAAATATATTAAAATTAAAATAAAGAGGTGAAA 20752 30 100.0 35 .............................. CTATGTATTAACGTGTCTTAAAATGCTTCTACGTG 20687 30 100.0 37 .............................. TTTTCCGAAAACGTTCCATGGTCACCCAGTTCATTTT 20620 30 100.0 36 .............................. TAAGAAATGGTGGGTATGGGTAATAGCTGTATTTGC 20554 30 100.0 37 .............................. CTATTACAGAAGCTACTTGACCATCAACTAATTGTGA 20487 30 100.0 36 .............................. TAAGAAATGGTGGGTATGGGTAATAGCTGTATTTGC 20421 30 100.0 36 .............................. ACTGTTCTAGGTGTTGTTACCTTATCGATATTTTTA 20355 30 100.0 38 .............................. ATTAACTGGGAAGCAAAAAAGATACTGGAAGAAAACAT 20287 30 100.0 37 .............................. TGTGAAAAATAGACAACCAGTACCTATGTTAGGAGAG 20220 30 100.0 36 .............................. TATAAATAAAGTTACTCAAAAGGTTTTAAATTATTG 20154 30 100.0 37 .............................. GAAGAATGGGTATCTAAACTAGAAAGAATAAAAGTAG 20087 30 100.0 42 .............................. TGGGTAAAAAATATAAAGTAACAGGATATGAAGGTACTGGAA 20015 30 100.0 37 .............................. TATTTAAATAATGCTTTGGGAGATACATTTAGTTCTT 19948 30 100.0 37 .............................. CGAGCATTTGTTTCATACATCCCTACCATAGAGGTAC 19881 30 100.0 37 .............................. ACCTGATAACATCTGCTTTCACTTAAATAAGTCTGTT 19814 30 100.0 38 .............................. ACATCTTCTTTAGGAGCATTAACTGGGTAAATTATCAC 19746 30 100.0 38 .............................. GTGTTAAGCTTTTCTAATTTTTTTTGTTCTTTATCTTC 19678 30 100.0 36 .............................. GGGAACAGAACCTGTTCTAATAAAAATATATGACTA 19612 30 100.0 37 .............................. CCAGCAACACTAAAGCAAAAGGGTTCGGAAATGTTTG 19545 30 100.0 36 .............................. TTATAAAACTCTTTACAAGGTAATTCTTCGTCTAGG 19479 30 100.0 38 .............................. GGATCTACTGTAGTTGATTTAGGTAACAATTTAGCTAC 19411 30 100.0 38 .............................. CCACTATAACCATTTCGTGTAAATTCCTTAAGCTCAAA 19343 30 100.0 38 .............................. TAAATGTGAATAATACAAAATCTAAATAAATAAAATAT 19275 30 100.0 34 .............................. ATTGCTTTCTTCTTTGATTCGTACTGGTCTTTAA 19211 30 100.0 37 .............................. CAATGTAGAAGAGCTTGCACTAATCAAAAGAAAAATA 19144 30 100.0 36 .............................. ATACTCTATCTGCTTCTGTAAAATGTTTTCCACCAT 19078 30 100.0 35 .............................. CAGTTGAATACAGACTTGGCTATGGGTATATTGGA 19013 30 100.0 38 .............................. TTCTTTATAAATTCATTATGAATATCTTCTATAAATTC 18945 30 100.0 37 .............................. TCATATGTTAACATTTGTATTGTTAATCCAGGCGTTA 18878 30 100.0 37 .............................. AAAGGGTCATAATCAAATTCTTTTAACATCTGTTTAG 18811 30 100.0 37 .............................. GTTTGTGCAATTGCATCACCATATTTTTTTTCTGCAA 18744 30 100.0 37 .............................. CTTACTCTAACATATCCATATTCGTTTTTGTCAATTG 18677 30 100.0 37 .............................. CTTTGTTGAAAATGTGGCAATGAAATTGTTTTAATCA 18610 30 100.0 37 .............................. TGGAGGTGTACTATGAATGAAGAATTAATTAATCATC 18543 30 100.0 37 .............................. AAAGTAGAGTTGGAGGTAAAGCTCCAGTATATACAAT 18476 30 100.0 38 .............................. ATTAGACTTCTTAGTTCACTCATTGCTCTACTTTGAGC 18408 30 100.0 36 .............................. CTATATAAAAATATGCTACTAAAGTTCTAAATACCC 18342 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 123 30 100.0 37 ATTTTTAGAATACCTATAAGGAATTGAAAC # Left flank : ATGTTTTTACTTTTGAAAAGATATTTACAAGTTTTCTAATAAAAACTACAAGTTTCCATGATAGTTCAGAAAGTTTTTATCATGGATTGATGTTAGGCATTACTACATTGCTTATAGATAAATATATGATAAAATCAAATAGAGAAAGTGGCTTTGGTAGATTTGATTTAGTATTAATTCCTAGAGAAAAAGAAAAAGTGGCAATAATTATGGAATTTAAAAAAGCAAATACTAAAGAAGAGTTGAGATATAAAGAATTTAAAAATGAAATTAAATAATCTTGTGGATAAATTTGCATATTTTGTAATGATATATAGCTTTCAAAGTACAAAATATTCTCAAAAATTCATATTATAAATAAAAGTCCACCCCCAATAGTGCAAAAAACCCTGGGGATGGACTTTTTTGAAAACTAAGCTATTCCAATATTTCTATAAAAATGTTATAATTTTATAAAAGGCAAAAAAAATAAAAAGCCTTATATTTCAATGGCAAAATGG # Right flank : TACTTCTAAACGTAGTGATACCAGTAGTAATTACTGCTTAGAAAAATAAAAATGAGATACTATACATAAATGAGTGATGTTATGTATGATTTAAGTTTAAATGATAAAAAAATAACTTTCAATAACTTAGAGAAAAAAATATATTATAAATGTCAAGTTAAGAATAAAACTTTTTGATCATTTAAGAATGTATCTTTTTACTCATGCTATTGTTTAAAATGAGCTTTTAAGCGATATGATTTACTATTAATAGAAACAACATTAGCATTGTATTAAGATAGCATTTGTAATGACTGGATCATAGAAAACATCCTCCCAAGCATTAAAATTTACATTAGTTGTTAATATTGTACTCTTTTTTTCATATCGAATGTCAATAAGTTGAAAAAACAACTTAGAATCTTCCTTTATTTTCAATGAGTTTAGCTTTATAATGAATTTAAGAAATTGTCATTTAATAAAAATTTATAAGCTTTTAAATTACTGTATTTCATAAATGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTTAGAATACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //