Array 1 315933-315675 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV795756.1 Rothia sp. HMSC071F11 Scaffold250, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 315932 37 100.0 38 ..................................... TGCTGCGCTAATTTAATGAGCTGTTTTTCGGATGGCTC 315857 37 100.0 36 ..................................... GCGAATTGCGTCCCGTAAGCCTTTCTGACCCTCAAT 315784 37 100.0 36 ..................................... TGCCCATTTAGCCGCTAAGACCTGTGTTTTGTGCTG 315711 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 99.3 37 CCCTCAATGAAAGTCACCCATTCTCATGGGTGAGACC # Left flank : NNNNNNNNNTCAATGAAAGTCACCCATTCTCATGGGTGAGACTAACAAGAAACTGGATTCCATCGCCCAAGGTATCCACCCTCAATGAAAGTCACCCATTCTCATGGGTGAGACGAAGGAAAAGATAATGCAGCAGACTGCTCAACCGAGTCCCTCAATGAAAGTCACCCATTCTCATGGGTGAGACTGACGTATCAGGCGCTATACAGTCTATTGCGGATTCTCCCTCAATGAAAGTCACCCATTCTCATGGGTGAGACGCCGCGAACTTAGTGTTCAGCCCGTAAGGTTCCTGCTCTCCCTCAATGAAAGTCACCCATTCTCATGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATGAAAGTCACCCATTCTCATGGGTGAGACATACGTGTCAGCTAACTCTGCTGCCTCCGTCACCGCT # Right flank : GCACCTAAAAAATATCCAGTAAATTCCTGGTCTCTCAGGCGCTTTCGCGAGCGTAGGGACAAGCGCTCATATTATTCAGTCTATCGGAGGCAATCGTTCAGACACAAAACGACTCTGACAAGGTGTTTCATTCACGCGAGCGAAACCCAGGATTTTCGGTAAGTACTAGGTGCTCGCGTTCCTCGAAACAATCCAAAGTAAAATACCCCGCACATCCGGCAGAAATAGCGGACAAGCGGGGCATTTATCTTTCTTAACCTAGCGAGTAAGCTTGCGGTGCACCACGCGGTGCGGCTTCGCAGCTTCCGGTCCCAGACGTTCGATCTTGTTCTTCTCGTAAGACTCGAAGTTACCCTCGAACCAGTACCACTGATCCGGATTTTCTTCGGTGCCTTCCCATGCGAGGATGTGGGTTGCCACGCGGTCGAGGAACCAACGGTCGTGGGAGACGACGACGGCGCATCCGGGGAATTCCAGCAGAGCGTTCTCAAGCGACGCCA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCAATGAAAGTCACCCATTCTCATGGGTGAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 316173-316426 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV795756.1 Rothia sp. HMSC071F11 Scaffold250, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 316173 36 100.0 37 .................................... AGAATCCGCAATAGACTGTATAGCGCCTGATACGTCA 316246 36 100.0 37 .................................... ACTCGGTTGAGCAGTCTGCTGCATTATCTTTTCCTTC 316319 36 100.0 36 .................................... TGGATACCTTGGGCGATGGAATCCAGTTTCTTGTTA 316391 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 97.9 37 GTCTCACCCATGAGAATGGGTGACTTTCATTGAGGG # Left flank : GCTGTCTCACCCATGAGAATGGGTGACTTTCATTGAGGGCAGCACAAAACACAGGTCTTAGCGGCTAAATGGGCAGGTCTCACCCATGAGAATGGGTGACTTTCATTGAGGGATTGAGGGTCAGAAAGGCTTACGGGACGCAATTCGCGGTCTCACCCATGAGAATGGGTGACTTTCATTGAGGGGAGCCATCCGAAAAACAGCTCATTAAATTAGCGCAGCAGGTCTCACCCATGAGAATGGGTGACTTTCATTGAGGGAGCGGTGACGGAGGCAGCAGAGTTAGCTGACACGTATGTCTCACCCATGAGAATGGGTGACTTTCATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCATGAGAATGGGTGACTTTCATTGAGGGAGAGCAGGAACCTTACGGGCTGAACACTAAGTTCGCGGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCATGAGAATGGGTGACTTTCATTGAGGGTGCGTATTCGACAACGTCGTGATACCACGATTACGATTGTCTCACCCATGAGAATGGGTGACTTTCATTGAGGGGCGAATTCAGACGGGCAGATGCTACTAATGTCGTAAGGGTCTCACCCATGAGAATGGGTGACTTTCATTGAGGGGCAGTAGCCAATAGAGATGTATCAAGGAGGTCTTGCGTCTCACCCATGAGAATGGGTGACTTTCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCATGAGAATGGGTGACTTTCATTGAGGGCAATGTTAGCCTTTTCCTTCAG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCATGAGAATGGGTGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 316520-316775 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV795756.1 Rothia sp. HMSC071F11 Scaffold250, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 316520 36 88.9 38 NNNN................................ TGCGTATTCGACAACGTCGTGATACCACGATTACGATT 316594 36 100.0 38 .................................... GCGAATTCAGACGGGCAGATGCTACTAATGTCGTAAGG 316668 36 100.0 36 .................................... GCAGTAGCCAATAGAGATGTATCAAGGAGGTCTTGC 316740 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 94.4 38 GTCTCACCCATGAGAATGGGTGACTTTCATTGAGGG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCATGAGAATGGGTGACTTTCATTGAGGGAGAGCAGGAACCTTACGGGCTGAACACTAAGTTCGCGGCGTCTCACCCATGAGAATGGGTGACTTTCATTGAGGGAGAATCCGCAATAGACTGTATAGCGCCTGATACGTCAGTCTCACCCATGAGAATGGGTGACTTTCATTGAGGGACTCGGTTGAGCAGTCTGCTGCATTATCTTTTCCTTCGTCTCACCCATGAGAATGGGTGACTTTCATTGAGGGTGGATACCTTGGGCGATGGAATCCAGTTTCTTGTTAGTCTCACCCATGAGAATGGGTGACTTTCATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCATGAGAATGGGTGACTTTCATTGAGGGCAATGTTAGCCTTTTCCTTCAGAAGATCAAGGTAACGGGTCTCACCCATGAGAATGGGTGACTTTCATTGAGGGCACAGTTCCTTTAACGGCGTAACTGCCGCAGGGTTTACGTCTCACCCATGAAAGTAGGTGACTTTCATTGAGGGACGTTGAGCATGCGGGTCTTCACGTCATGGCGGGCCCGTGTCTCACCTGTGAGAACAGGTGACTTTCATTGTTGATACCTAAGATGGTTCCGAGGTGCTCAGAACCCAGGCTTAACACGAGAAATATGTAGGAAGAGAGATATGACGAAACATAAAGCATAGCTTCATAAATACTGATACTATAAAAAGTACAGAGTTGTTGGTTTACATTTGAAACTCACCT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCATGAGAATGGGTGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 4 316868-317125 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV795756.1 Rothia sp. HMSC071F11 Scaffold250, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 316868 35 88.6 39 NNNN............................... GCAATGTTAGCCTTTTCCTTCAGAAGATCAAGGTAACGG 316942 35 100.0 39 ................................... GCACAGTTCCTTTAACGGCGTAACTGCCGCAGGGTTTAC 317016 35 91.4 40 .............A.G.A................. GACGTTGAGCATGCGGGTCTTCACGTCATGGCGGGCCCGT 317091 35 82.9 0 ........TG......CA..............TT. | ========== ====== ====== ====== =================================== ======================================== ================== 4 35 90.7 40 GTCTCACCCATGAGAATGGGTGACTTTCATTGAGG # Left flank : CGATGGAATCCAGTTTCTTGTTAGTCTCACCCATGAGAATGGGTGACTTTCATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCATGAGAATGGGTGACTTTCATTGAGGGTGCGTATTCGACAACGTCGTGATACCACGATTACGATTGTCTCACCCATGAGAATGGGTGACTTTCATTGAGGGGCGAATTCAGACGGGCAGATGCTACTAATGTCGTAAGGGTCTCACCCATGAGAATGGGTGACTTTCATTGAGGGGCAGTAGCCAATAGAGATGTATCAAGGAGGTCTTGCGTCTCACCCATGAGAATGGGTGACTTTCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GATACCTAAGATGGTTCCGAGGTGCTCAGAACCCAGGCTTAACACGAGAAATATGTAGGAAGAGAGATATGACGAAACATAAAGCATAGCTTCATAAATACTGATACTATAAAAAGTACAGAGTTGTTGGTTTACATTTGAAACTCACCTCAAAACCCACTTCTCTCAAAAGCATTTCGTGCGCTGCGTATAAAGCCTTTCAGACTTTATCGTAAACACAAGCAATATAAGTAGAACAATAGCGTTCTACATTAGGTTAGGAGAATTCCGTGTCAATTTCGGATAAAGCTAATATCAGCTTCGAAGATTTGAAGGAAGCATGTGCCGCTGGTGGTGCCTCAACCTTGGTTTCGGTAACAGAGCTTAAACCTGCTGCAGGAGAACATGCATCGATCGCTCCAGCTAAATTTATTGAGGACTCAAAGCCAGTATTCGCCTTCGAGACCCGATTTATTGATGGTAAAGCTGCCCGGGTGGTACTCATTGATAGTAAGCAATCA # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCATGAGAATGGGTGACTTTCATTGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //