Array 1 83947-81847 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKHR01000001.1 Xenorhabdus sp. PB62.4 Xenpb_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83946 29 100.0 32 ............................. CCGTTATTCAAAACAATAGAAACAGTAAGGGT 83885 29 100.0 32 ............................. GTAATAAAACGCCTCGAATGTAGATACCGCTG 83824 29 100.0 32 ............................. AATGCCTGACGAGTTAAAGGAAGCTCTGACCG 83763 29 100.0 33 ............................. TGGTGATGCGTCAGGAATGCGATGTGATCGCAC 83701 29 100.0 32 ............................. TTGTACTGGCAGGCACAACACACGGGCGGAGC 83640 29 100.0 32 ............................. CTGACTGGACTATCTCAGAAATGGCTGGTGCA 83579 29 100.0 32 ............................. TAAAAACACGCTTAGGGTATCGGTATAACGTG 83518 29 100.0 32 ............................. CGACTACAGCAACGTGTTACCGCGATTATGCG 83457 29 100.0 32 ............................. ACGGCGCCACGTATTGCCGCAGCAACCTGATC 83396 29 100.0 32 ............................. CCTTATTCACAAACTTCTTAAACAGCTTAATG 83335 29 100.0 32 ............................. CCTGTTTTGTATCATACGCTGAATACAAATCA 83274 29 100.0 32 ............................. CCTGTTTTGTATCATACGCTGAATACAAATCA 83213 29 100.0 32 ............................. CCTGTTTTGTATCATACGCTGAATACAAATCA 83152 29 100.0 32 ............................. CCTGTTTTGTATCATACGCTGAATACAAATCA 83091 29 100.0 32 ............................. CCTGTTTTGTATCATACGCTGAATACAAATCA 83030 29 100.0 32 ............................. CCTGTTTTGTATCATACGCTGAATACAAATCA 82969 29 96.6 32 ............................A CGCGCAACAAAGCCCTGCATCCACTCTGGGGC 82908 29 100.0 32 ............................. TATAATTCTCGTTGGTCAGTCTGACATGTTTC 82847 29 100.0 32 ............................. ATCGTCAGAAAGATCCATTTCCACATATTTTG 82786 29 100.0 32 ............................. CGAAATTGTAGTTCGCATACACTGCCATAAAA 82725 29 96.6 32 ............................C ATTACCACACCACAATCTTATTGTATGTGGCC 82664 29 96.6 26 ............................T GCATACCCGACAACCCCGGCAGGCAC 82609 29 100.0 32 ............................. GCTGATGTGAGTTTAGTGACGTGCATAATTAC 82548 29 100.0 32 ............................. AAATGCGGATTGAGGTTACCGAACTGGCTCAG 82487 29 100.0 32 ............................. TGATTGGGCATTACCGGCAATCGCTGGCATTA 82426 29 100.0 32 ............................. CATTACCCAGATATCACGAATGACATGTTTGT 82365 29 100.0 32 ............................. ATACTTTTATAGTATCAAATATCACCATTATA 82304 29 100.0 32 ............................. TGACAGTGCAGTTTGAGTTAAGTCGGATTGAA 82243 29 100.0 32 ............................. TCCTCATTGGAGAGGTCATAGTAGATACCGGG 82182 29 100.0 32 ............................. TAATATTTGCTGCTGCTGAACAGCGCCTAGCT 82121 29 96.6 32 .............G............... CCCTGCAACCGCTCACACTCAACGGGCGTTAA 82060 29 93.1 32 ...........A.G............... TGAAATGGATATATTATCGTCTATCATTTTCT 81999 29 93.1 33 ........A....G............... CCCCTCTGCCTACGGATGGGGCGCATTTACTGC 81937 29 93.1 32 ...........A.G............... ATATCCGTTCCCAATCTGGCTGGATAATCACG 81876 29 82.8 0 .A.........AA............C..A | C [81866] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.5 32 GTGTTCCCCGTGGATACGGGGATAAACCG # Left flank : AGAATATTCGTTCGTTTTACCACCAAATTAAATGCGTTTTCTCCTCCTTATATCTTAATAAAACTAATCATTTAATATGAAGATAATTCCAAATATTAATTTTTTATTTTCGGTATATTTCAGTTGATTAAAATAATATGGACTACAGAAAATTTTTTATTCCTATTTATATACTGACTAAAGCAAAATAAATCACTATGACGATATTACTGATAAAACTTCTCTGGTATGTAGTGATTTTGTTTAATGAATAGTTATTTTTATGTGTTCTTATGTATAAGAAGTTAGCGTTATCCCTGTAATTATGGGGAGCACTTATTAGATGAGATCACAAAGACTCAATGAATGAGTGTGTAAAAAATTGGGATAAAATTCGTTCAAGTTTATAGAGGATTGGCAGGAAAAAATAGAAGGATAAATTTGTCTATTTTATAAGCTAGAAAAATGGTAGAATTTTCCATCTCTAAAAAGTATTTATAAAACAGATGGCTATATTTAGA # Right flank : CTGTCGGGACTGGTTACTTACCTAATTCTCCCAATGCCCTACGTATTGGCGTATGCCGCTTAATCAGCTCTTGCAATACCTCTTTCAATAACTGACTCTTGCCATTGCCCAATGGCTCCAGCACACTTTTTTCATGGGATTCTGCTTCAGACAATAAGCTTTCTACCACTTGCAGACCTGCCTCTGTCAAATGTACCAAAGTGACGCGACGATCACCGCCACCGTTGGAAAAACGTGCTACGTACCCCTGCAATTCCAAACGCTGTAAAACGCGGGTAATGGTCGGTTGTTTACTGACCGTTTTTTGGGCCAAAAGGCTGATGCCGACCGGGCCACTTCCCGCCAACGTCGATAACACCCGCCATTCCAACACTGACAATCCCTGCGCTTCAACGGTATCATGAAATTCAGAGGAAACTAGCATCCATGCCTGCCCAAGCAAGGCAGGCAAGTAATTGTCAACAAACACTTTTGCATCTGGCATAAGTTGAACAACCCTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGGATACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 88415-88020 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKHR01000001.1 Xenorhabdus sp. PB62.4 Xenpb_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88414 29 100.0 32 ............................. AGGTTCATGCCTCACGACTCATCCGCATCTGT 88353 29 100.0 32 ............................. AATCTTGGATGTTTACGCCACTGAGTGATTAA 88292 29 100.0 32 ............................. TTCATTTTCGATTTCCTAATTATTTTGCGTTT 88231 29 100.0 32 ............................. CCAGAAAACGATTTGATGATAGGCTACATCAT 88170 29 100.0 32 ............................. GAGCACAACGATGATCAAACTCAGCAAAGAAC 88109 29 96.6 32 .........................T... GGTATCTGAGGGCCTGTATTGAGTGCGCTGGT 88048 29 86.2 0 .............A.A...........TA | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.5 32 GTGTTCCCCGTAAGTGCGGGGATAAACCG # Left flank : CATTAATTGAAGAAGTCCTTGCCGCGGGCGAAATATCGCCACCACCCCCTCCTGCTGATGCACAACCTCCCGCTATTCCCGAACCGATATCCATTGGTGATATTGGGCACAGGAGCCAATAACTATGAGTATGACGGTTGTTGTAACGGAGGCCGTTCCCCCACGATTACGAGGGCGTTTAGCCATTTGGTTACTGGAGATACGAGCCGGAGTTTATGTCGGGGATATCTCTCATAAGATTAGGGAGATGATTTGGGAACAAATCACTGAACTCACCGAAGATGGCAATGCCGTTATGGCTTGGCAAACGAATACTGAATCTGGATTTGATTTTCAGACAATAGGGGAAAACAGAAGGGAACCGATAGATTTTGATGGCCTGCGTTTAGTGAAATTTAAACCGCTTTCTGAGGATTAATTTAGAGGGATTAAAAGGCTATACAAAATGGTAGAATTTCCGTTTCTGATAAAGTTGTTCAAAAATATATTGTTATATTTAG # Right flank : CTTACCAAAAAATCACACAACCGGAAACAGAATATAATGCGTTGAAAAACAAACTTAATCAGATTGTTGGTAATTCCGAAAAAATATGAGACAAAATTTTTTTAGGCAATGGGATTACTATGGACCTATAGGAAAATATAAAAATAAAACTTAATTTATCAATTAACCAACAATTGCCGTTTATCTTCACGCAGGGCATTCTCCGCCAGCATTTTAAACTCTTTCACTGTCCAATATTGTTTTGGGACAGGCAGGTTTTTCATCTCATTGGTTGACCATAACTGAAATTCAGCCAGTTTATCCAACGAAAAATGCTGATAGTGCTCAGGTAAAGAGAGACGTAACGCAAAGTTTTCTTTACCTGAAGGCATGAGTGGATAACGATTATCGTGGGTATCATAATTGCGGTGCAGCACTAAAAATTTTTCAGGAACGCGTTGATAACTGTTCCACCATAAGCCATCTACGCTATCAAACATCTCTTTTGTGCCTGACTTGGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGAGTGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 99339-98340 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKHR01000001.1 Xenorhabdus sp. PB62.4 Xenpb_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 99338 29 100.0 32 ............................. ACGTTAATGCCATTGGCTGACCGCTCACCCCT 99277 29 100.0 32 ............................. TCCGATAGACCGACTGTGAAAACTCAATCTGA 99216 29 100.0 32 ............................. CACGTTCTCTGAGGTCTTGTCTGTCTTTACCT 99155 29 100.0 32 ............................. CCAGACTGGAAAATCTGGCTGAAAATTTGGTG 99094 29 100.0 32 ............................. GCAGGAAAAGAATTTAACAAAAAGCTAGATGA 99033 29 96.6 32 ............................T GCAAAGGCATCACGCGCTTCTTGCCAACTGAC 98972 29 100.0 32 ............................. TCAATCTGTCTGATGCTGCTAATTGTACCAAA 98911 29 96.6 32 .......T..................... GCAATGGAGGAACTGAGTCGTGATGGAGATGC 98850 29 96.6 32 .......T..................... GTCGATTTAGGTATCATTGACGATCCGATTAA 98789 29 100.0 32 ............................. AAAACACAGCAGGAACTGGGCGGATTACCGTC 98728 29 96.6 32 ...........A................. TAGAAGAAATAAGATTAAGCGAAGAATTTACT 98667 29 96.6 32 ...........A................. TGGCGGAACTGATGCCGGAAACCATAGCCCCT 98606 29 96.6 32 ...........A................. AGCGTGGAGCATGTATTAATTACAAATGTGAA 98545 29 96.6 32 ...........A................. ACCGGGGTTTATTTTTTATTAATTAATGATGT 98484 29 100.0 32 ............................. CATTGCCAATAATAGCACCTATACTTTTTTAG 98423 29 100.0 26 ............................. TTGTTATTTTCATTTTTATTATTTTT 98368 29 72.4 0 TC.........AAA............TAC | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.0 32 GTGTTCCCCGTGGGTACGGGGATAAACCG # Left flank : ACCGGCTGGCTCAGCCAGTGCAGTAAAACGGGCAAGCTCATACCGAATTTGCGGCCCAAGTAAAATCACATCGGCTTCATGAATGCACGCTTCCAGCTCCAGCGCTGGCACGGCCTTGATAGCCACATCCAACTGCCGTTTTTCAGCTTCCGACTGCATACGCTGCACCAACATGCTGGTAGACATCCCCGCTGCACAACACAATAGAATGGTTTTCATGATCTTGTTCTCTTTATTATTATCTCGTTATTATTTGCCCACATTGGTAATGAGAGCGCTCTCATTTAAGTTAAGGCTAACAGGTTATTTTGCGATTACTGCGATAAAAGTCTCATAATTTGATAAGAAACCATTAAGAGTGTGGATAAAATGCGAGCTGCATTACAAATGGTAAATAAGGAAAAAAGATAAGGGAGAATTGGACTGATTTATAGGCTGAAAAAGTGGTAGAATTTTTCCACTCTAAAAAATACTTATAAAACATATGGGCATAATTAGGG # Right flank : TGATGTTAAATAACAAACCCATACACTATATAGAGATAAATAATTAATAGTTCTCATATTTGTCTCTACTAGGAAATATTTTTTGGATGTTGTTTTTTTATTTTTTTTAATTTTAAAAATTTGAATCATCAAAAATACCAGCTAACATTAGAGTAACTAGAAAATTTTTTCATACGAGGTTAACAATGAAACGCTATTCAAGTAAACAAAAACGCACTATTCAGGAAAAAATGCTATTACTGAACATCAGCATTTCTTCCCTGGCTGAATCAGAAGGGATTTCTAGGAATACTCTGAATCGATGGCTAGAAGACGCATTATTTTCAATAATAAAAAAATACCCACAAAAAATTAGAAAACTAGAGCAAGCTTTAGCTTATAAAGAAAAAACCCTATCAGATAAAAACATTCAGGGCTTATTACAAGTGACCATGACTATAAATAGAGACACCGAAACCTAAATAGTCTAACTATAGGATTCTCATCATTATCTGTCCATA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGGGTACGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTAGGTACGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGAGTACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //