Array 1 11083-12880 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWI010000032.1 Erwinia amylovora strain E2006P Ea_E2006P_contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11083 29 100.0 32 ............................. GCCGTTGCGCGCGCTGCTGACGATGCCAGTCA 11144 29 100.0 32 ............................. CCCAGAAAAAACAATTGTCGTTAGCATGAAAT 11205 29 100.0 32 ............................. GTTAGTAATTTGGCCCACACAGCTATCTGCAA 11266 29 100.0 32 ............................. TCTTGACTTAGCAGCATCAATAACGGCCTTAC 11327 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 11388 29 100.0 32 ............................. ATTCGGCATTTTTATCCCTCACAACATGCGTT 11449 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 11510 29 100.0 32 ............................. GCCGCATTAAAGCCGCCGCCGCCGGAACCCCC 11571 29 100.0 32 ............................. GTGGCAGCGGCATTTGGGAAGGATCACAAAGA 11632 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 11693 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 11754 29 96.6 32 ................T............ GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 11815 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 11876 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 11937 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 11998 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 12059 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 12120 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 12181 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 12242 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 12303 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 12364 29 100.0 32 ............................. GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 12425 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 12486 29 96.6 32 ............................A TTGAATCAGTGTCTTTCAGGGACGATGTTTTC 12547 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 12608 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCC 12669 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 12730 29 96.6 32 .................A........... TTTCTCCACACACAACGGTGAGGGCACTGTCT 12791 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 12852 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.4 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAGAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23790-25412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWI010000032.1 Erwinia amylovora strain E2006P Ea_E2006P_contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23790 29 100.0 32 ............................. CTGTTGAACCTGTCGGCGTATCAACCGGGCTG 23851 29 100.0 32 ............................. CCTCAATCCCCTACGAGGCGATCATGTCGGCC 23912 29 100.0 32 ............................. ATCGGCATCAGACTGGTACGGGAGTAGAGCAG 23973 29 100.0 32 ............................. CCTTGTCAGCCTACGAGATGGCAAGGTTTATC 24034 29 100.0 32 ............................. ACTGTCGCAACAAGGAGAAATGCAAATGAGTA 24095 29 100.0 32 ............................. CCGGCAACGTTCTACTCCAGTCCGCACCAGGT 24156 29 96.6 32 ............................T CAGACTGCACTGAGTTCGTTTCCTCACTGCTC 24217 29 100.0 32 ............................. CATCTGGCCTTTGCTATTCCCCGAAACCGCTA 24278 29 100.0 32 ............................. TTCCGGCATGCTGCGCAAATTCCGTCCCGTGC 24339 29 100.0 32 ............................. CCGATACGCAGAGGGTATTATCATGAAATTAA 24400 29 100.0 32 ............................. TCCGCCGTTTACGTTTCTGCTAATTTCGACAT 24461 29 100.0 32 ............................. GAACTCCCGGGCCTTGGGTAATTGATGGTGGC 24522 29 100.0 32 ............................. CGTGATTTTTCAATAGGAGCAATGGAAAGGGC 24583 29 100.0 32 ............................. AAATCTCACCAGTGGAGACTCCAGCGTCGAAA 24644 29 100.0 32 ............................. AACGTCTGGGTATCTGGCGCACATCATGAAAG 24705 29 100.0 32 ............................. TTGGAAAAAAGGATATCAACCAGTTTCTCAGT 24766 29 100.0 32 ............................. GTGATATGAGCGTCCTTGAGGATATGGGCGTA 24827 29 100.0 32 ............................. GCGATCTTATGGCGTTTGGAGAAAAAATAATC 24888 29 100.0 32 ............................. CGGATCTTACGATGGTTCTAATGACTCGGTCA TATGCGGG [24908] 24957 29 96.6 32 ..................A.......... CGCGCAAAACATATCCTCATCGCTGATTTATC 25018 29 100.0 32 ............................. AAAAAAACCGGATTCCTCACGCTATTTGCGCG 25079 29 100.0 32 ............................. ACGCGAATACAAAGCAGCACGGCAGGGGGGAG 25140 29 96.6 32 ......A...................... CGAACCTATGCGGCATTAGCGGATGCCGCCGG 25201 29 96.6 32 .............G............... TCGTTCCGTAAATGGTGTCTATCGTGGCAGTG 25262 29 100.0 32 ............................. TTTTTTAATTGCGTGTTGAGTCGCGGGGCAGA 25323 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 25384 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.6 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAACCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATGATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 34878-35206 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWI010000032.1 Erwinia amylovora strain E2006P Ea_E2006P_contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 34878 28 100.0 32 ............................ GGCTAAATGTCTGAATTCAACGTTCTACAAAA 34938 28 92.9 32 ...........C......G......... ATCGCACCCCACTGATTGAAGAGCAGCACACT 34998 28 92.9 32 ......C..T.................. TAGCAATAAATTCGATAGACGCTGATTTGCGT 35058 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 35118 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 35179 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 92.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGCGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTAAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAATCGCGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAGTAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 3.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //