Array 1 36359-37046 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRUY01000065.1 Pseudomonas aeruginosa isolate 201.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36359 28 100.0 32 ............................ TTGTGGCGCAGCATCCGGCGCGGATGGGACTG 36419 28 100.0 32 ............................ TGGGTCAAGACCCACATGCCCGAACACAGGGG 36479 28 100.0 32 ............................ GAGTGCCAGCGTCGGATAAGCGCCTGGATCAA 36539 28 100.0 32 ............................ TCGGCATTGCCGAGCGCTTCGATTGATGTGTA 36599 28 100.0 32 ............................ AATCGGAAACGGGGCCGTGATCGTCCGCCATT 36659 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 36719 28 100.0 32 ............................ AAGAGGCTCACATCGCTCATAGCGTCCTGGGC 36779 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 36839 28 100.0 32 ............................ AATCCAGGTGACGTCGTGCATCTGGGACTCGT 36899 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 36959 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37019 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATTGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47521-45572 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRUY01000065.1 Pseudomonas aeruginosa isolate 201.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47520 28 100.0 32 ............................ TCTGAGGGCACATGAGAGCGCAGTGGTCTTCT 47460 28 100.0 32 ............................ ACGAATGCGAGTGCGACGGCGGATTCCACTAC 47400 28 100.0 32 ............................ ATATGCCGAAGCCGGCAACTTCTTCTGACTCG 47340 28 100.0 32 ............................ TCTGAGGGCACATGAGAGCGCAGTGGTCTTCT 47280 28 100.0 32 ............................ TCCCTGAGCGGGAAGGGAAGGCCATCAGGCCA 47220 28 100.0 33 ............................ ACTGGGTGCGGTCTCGGTACTCGGATGTTGAGT 47159 28 100.0 32 ............................ GTAGCCGACCGCTTGAACGACACCGCGAACGT 47099 28 100.0 32 ............................ TGGCTGCGTGCGGGCGAGTTCAAATGTAAGTC 47039 28 100.0 32 ............................ TGGACAATGCGCAGCCCAGGCGCTGGATTTAC 46979 28 100.0 32 ............................ TTGCAGCGTGAACATCGATGGCATGCATGTCC 46919 28 100.0 32 ............................ ATCACGATAACCGGTCACCATGCGCTTACGAT 46859 28 100.0 32 ............................ TTTACGCCATCAGCGGGGATCGATGGGGCCTC 46799 28 100.0 32 ............................ TGGGCATCCTGCTGCTGTCCGGCACGATGGTT 46739 28 100.0 32 ............................ TGAATCCCTCCTACGACACTTCCAACGTATTG 46679 28 100.0 32 ............................ GTCAACGATGAATATGGCATGACTATCTCGAA 46619 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 46559 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 46499 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 46439 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 46379 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 46319 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 46259 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 46199 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 46139 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 46079 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 46019 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 45959 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 45899 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 45839 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 45779 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 45719 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 45659 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 45599 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //