Array 1 117965-117696 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRTU010000010.1 Vibrio metschnikovii strain M29D Scaffold10_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 117964 28 100.0 32 ............................ TGATTATCGCTGACGATGGCACACAATCAGCC 117904 28 100.0 32 ............................ TATCTGAACAGCAAGGGTTTGGATATCCTGAG 117844 28 100.0 32 ............................ TAAAGCCTCTTTATGCTTTTTAGTATCGCCTC 117784 28 100.0 33 ............................ AATAATTGGTTGGCTTGCTGCGCTTCGTTTTTT 117723 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCGGTAACTTTGCCCTGATAAATTGTGCACGCAAAAGATTCAACTGTTGCTGAAAGGTCTCTTTCTTTGGTGTTGCTGGTTCATTGATTCCGCAGGCTAATTCGCTTCAACTTGTTTGGGATCTTATCGACAACAATGATTGCTGAAAGTAGGCTGGTTTGCCATTTTGAGTTAAACTTCTGAGAACAAATGAATTTTGTAAAAGTTCAATGTAATCAATGAATAATAAAGCATGACAAACGCTTCAAGAGGGACTTCCAACGCGCGGCATTTTTATTATGCGTTGATTTTGGTGGTTACGGTGTTATGCGGAAACTTGGTAGTAGCGTTGTCAGCCCCTTAAGCGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGGATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATAAAGTTTCATA # Right flank : TATTGGTACTTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGCAGCATTTTTGTAATGCGTTGATTTTTGTGTTTTACGGTGTTGTGCGGTGAGTTGGTCGTTGCGTTGCTCACCCCTTAACCGGGCGTTAGCCGACTTCTACCACCTTACTCATCAGTAAGTGTATACTTAGCCGAGTTTTACTTACATTGAAGAAGATCACTATGACAGCATTGACAGATAACATGTGGAATATGAAACCAAATATACCGCTGGCTAAACAACTTGCCAAAAGAGATGTACCAGCTTTGGTTTATGACGCTGTTAACCTCGAGGGTGTTGCAATGACTTTACCTGAGGTGCAAACCATTTTAGATGGGATCACCGTAGGTGGCCATCGAATTAGTGATCAAAATATGGCAATGAACCAAGCTCGAGCATGGGAGTTTATTTTTGGCTTAGTTGATCAAGGTGAGTTCCAATTTAATAAAGAAACC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8847-8994 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRTU010000001.1 Vibrio metschnikovii strain M29D Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8847 28 100.0 32 ............................ TACGGTTACACGGCCCACAAAACTATTCACAT 8907 28 100.0 32 ............................ TTTGTGGGTAAGGTTGATTTTGACGTCGACGG 8967 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTTTTGCATGATTTACAAGGTTTAAACTGGCTTGGTCCGTTATCTGGTTACTGCCAAGTGAGTGAGATATTGGCTATTCCTGAACAGGTGCAATATCGAGTGATCTCAGTAAAGCGTAGCAATTTAAGTCAAGCGAAGCTCAGACGTTTGATCGCTCGCGGTAGCATCGATAAAGAAGGTGAAAAACGTTACAAAGTGAAAATGCTTAGCCAAGGTTTTGATAATCCGTACCTAGATTTATTCAGCAGTTCGACGAAGCAGGTACATCGTAAATTTTTTGAGTTTGGTGAAATACAGCCACTGCCAGTATCCGGAAAGTTTGATTCCTATGGGCTAAGTCATACCACTACGGTTCCTTGGTTTTAACCCTATTTTTTTGCTCTTTAAAAATAATCTTTAAATACAAATAGTTACATCGGGTGATTTAAAATAGGGTAAAAATACATTTTTTGCTCTAACTGCTTGTTGTAACTTATTTTTATGTTTTTATTCTATA # Right flank : ACGCCGGATTCGATGGAATCAAACTCCCGCCAGTCATCCCCGCGAAGGCGGGGATCCATTCTGCAACAGATGCCAAGTGCTTAAGTGAGCGATCAATGGTCACCGTTTACTGATACTGCGCATAGATTCCCGCCTACGCGGGAATGACGGTTTTGTGTGGTTTTGGGATATGATCTCCATAGATCCCCGTCATGTTTTGCTTGCTACTGCTGTGAGGCAGGGAAATGAAGGTGTAGCGATCATCGAAAACTGAACCACTAAATACAATTAGTCAGCATAGACTCCCACCTTGACTGCAATGATGCTTGACGCTTTGAATATTCGATTATTCACCGTGATTACAAGCAAACGTGAGTTTCTTAACAATATGTGCGCCTAATTCCTTAGACACTACGTTGTATGATTGATGTGAGTGGTGGAATACATGAGCTCCCTAACGTTACCTTGCCAGCGAGAGATTGATCTCTCATCAGAGTTAAACGTCGTATTACAAGACAATG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 30760-30252 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRTU010000013.1 Vibrio metschnikovii strain M29D Scaffold13_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30759 28 100.0 32 ............................ AGTGGGACTATCAACAGACTTAGCAATATTGA 30699 28 100.0 32 ............................ GTAACGTTAGGTTCAACAATCGCTGGATTAGC 30639 28 100.0 32 ............................ GCCTTCGGGCGGCTTGGAGTCAACATGATACT 30579 28 100.0 32 ............................ TCGTTATCTGTTTACTAGCGATACAGCGAACT 30519 28 100.0 32 ............................ AACAACAAGACCAAATCACGCCGCAAGGCATG 30459 28 100.0 32 ............................ TGCCAATTTGATAGAGCCCAAGAACTAGAACA 30399 28 100.0 32 ............................ TATGATTTTTAACGCCATAGGTGAGACGATTA 30339 28 100.0 32 ............................ TGAATCGCCATGCAAATCGCTTCTTCCAATCT 30279 28 96.4 0 ..........................C. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTCACCTTCAACCAGTAGTTGACGGAGAGTCTGCAGTTTAGTCTCTTGGTTTTCGAGTAAACGCAAAGCTGAGCGAATAACTTCACTTGCAGAGCCATAACGCCCACTTTGAATTTGGTTTGTAATAAAACCATCAAAGTGTTCACCAAGGGTAATACTTGTGTTCTTAGCCATAAATTTATCCCCAAAAGTACCAATAAGTACCTAATTATGGTATTAAATGGCTTCGAAGGCAAGGCGTATACGAACGCTCCAAGAGGGACAACCAACGCGCGGTATTTTTACTATGCGTTTCTTTTGTTATGCGGTTGCATCGGTATTCCGTTGTGCGTTCTTTAAAAAAACGGCGTGAACTAGCAATAAAATTACCCATATTTTTTCGTTTAATTTTAACTTATTGATTTATATAAATAATAATCTGGATGAAAAATAAAGGGTTATTTTGATAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGTTATAGTTTCATA # Right flank : TTGCAGTTGATTTGGTTTGGTTGGATCAATAAAAACAAACTTTTATTGTATTGAAAGCCGTCATTGACTGAACCCAAAAATCAGGCAAAATGTTTACAAGATGCACAACCTCGCCCACTCGGCGGGGTTTTTTTATGCCTGTCATTTGGGGGTGACAATGTCACTAGATAAAGCCACGATTGCTATCGCCACTGGCACTGGAACGACGGTCGGAGTCAGTGCTGCTAAATCTGCGCAAAGTGCGCAATCTTTGTTAAATTCCAGCATTTCACAGATATTAGCGGGTGATTACACACTCTACGGCTCTGATATCGCTACGATAGCCGGTATCGTTATGGGAGCTCTCGGTATTGTGGTTACGCTCTATCGTATTCGCGTCACTAAGCGACTCGCCAATGCGTTATAACAAGCTGACTACGGCGTTAATCGCTGCTGCTATCGGTATAACGGGCGGTTTTGAGGGTTACAACCGCATTGCATACAAAGATAGCGGGGGAGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2075-2402 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRTU010000030.1 Vibrio metschnikovii strain M29D Scaffold30_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2075 28 100.0 32 ............................ TTTACAATGTCACCTCGATCAAATACAGCCAT 2135 28 100.0 32 ............................ ATATTTCGCAAACGCAGTTATCATCCCGCGAA 2195 28 100.0 32 ............................ GCTTGGCTGCGGTGTATCTAGGTCAACTTTAT 2255 28 100.0 32 ............................ GTACAGTCGGATTGTTCTTGGTCTTTCATTTT 2315 28 100.0 32 ............................ AATCGCAAAACCGACCTTTAGCCTCGCCATCC 2375 28 92.9 0 ........................A.G. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTACCAAAATCAGAAAATTGAAATCGGTTTATCTCAAAACACTAAGATACAATCCGCTCTAGACGGTTCATGGTATGATCTTGAAATTCACTTTTCAGAGTCAGTGGTAAAACACTATCAAGGTATCGAATTGTCAGTTATTCCAGTTCATCATCTTGTTGAATACAAAAGAATATTGGGTAGGGAAGTCGATTTAATTGACATACAAGAACTAACTTTGAGTTCAGCGCCATAACAAAGCGTTTAAGAGGGATTCGCAACGCTTAGCATTTTCATTATGCGTTGATTTTATTAGTTTTTAGTGTAATGCGGTGAGTTGGTAGTAGCGTTACTCACCCCTTAACGCGGCGTTAACTGGCAATGAAATTACCCATATTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAAAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGATAAAGTTTCATA # Right flank : ATATTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGTGGCATTTTCGTTATGCGTTGATTTTATTAGTTTTTAGTGTGATGCGGTGAGTTTTTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCGCTAATTGGAAAAATGACAGAAGAATGAATCAGCATGAAAAGCTCAATTATGTAGAATTTGCAGCGAAAGACTTAGAGTCAACGAAGGCATTCTTTTCAAAGGTTTTTGGCTGGAGCTTTGTTGACTATGGGCCTGAATACGCAGCTTTTTCAAATGAAGGTTTAGATGGTGGTTTTTTCAAATCTGAGCGTTCTAGTCGGACTGAAAATGGTGGCGCACTCTTAGTTTTCTATAGTTCAGATATTGAAAGCACATTGGAGAAAGTTGTGAAAAATGGCGGCGATATCATCCGTCCAATCTTTGAATTTCCTGGTGGTTGTCGTTTTCATTTTATAGAGCCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4524-4791 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRTU010000030.1 Vibrio metschnikovii strain M29D Scaffold30_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4524 28 100.0 32 ............................ TAATGGCATCAGTGCACACACCTGGGAAGTTG 4584 28 100.0 32 ............................ ACTATCGCCAAGGTTTTCAGGTAGCTGGTTAG 4644 28 100.0 32 ............................ TTGCGACTTTAAATACTGCTTTGCTTGTTCTG 4704 28 100.0 32 ............................ CAAGAGACGAGTTAATCCGAAATCTTGAGGGA 4764 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTTGTACACGGGATCCCGATATCGCATAGGATTATCACGAATATCGAGAGCTTCGTGTATATCAACCCTTAGATGGTTATGGTGATCGATTAGATAAGTATTTGTTCTGGTGTCTAGAACATAAGCTGTTGTCTTCATTAATTCACCTGTCCATTTATACAGTTTTATTTTGCCGAAGACTTGATGTTTATTCAACAACCAATACAGGGCTTTGTGTGCGAAAATTGCACATAACAAACGCTTCAAGAGGGACAGCCAACGCGCGGCATTTTTACTATGCGTTGATTTTGTGTGATTACGGTGATATGCAGTAAGTTGGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTTAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATACAGTTTCATA # Right flank : ATATTGGTACTTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGCGGCATTTTCGTTATACATTGATTTTATTAGTTTTTAGTGCAATGCGGTAAGTTAGTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTAGGCGATAGTAGACATCGACAGGCATTGATTGTGATAATGCGAGCCATTGTTATCAATCTCTAAATTTATATTTGGCTCATAATCAAAGGTTACAATCGATGCGTACTCCATTCCGTTTTATCTTGTCCTTACTTGGGCGAGCCAATTCTCATGAAGCGACAGAGCTCATTACTGGGGCAGACGAAATAAAGGTTGTTTCCAATGAGCCAGTGATGAGAAGAGCGCTGAAGACTCATATTAAAAATTTAGAAGGTGAGCAGCGTGTTTATGATGCGACCTTAGAGATGTTGATCGAAACCAACCAGTTTTCATTGAGCATTGCGGAAAAAAACTGTTTTGGATTTG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 8858-9065 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRTU010000030.1 Vibrio metschnikovii strain M29D Scaffold30_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8858 28 100.0 32 ............................ AGCTCGCCGTGGTTTCGAATACATTTGAATAG 8918 28 100.0 32 ............................ TCAAGCGCTGAAAGTTTATAAAGCTCATCGGT 8978 28 100.0 32 ............................ AAGTATGGCTGTTAAAGCTTCGATAATTTCTT 9038 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAAAAA # Left flank : CGATAAATTTAAAAAAGAGTTGTCTGTATTTTATGAAAAGAAAGCTGTTGAGATAATATTTTATATCAATAATAATGTCGACAAGAAATTTTTAACGCCAGAGACTAAGCATTACTTTATCCCTGACAGTTTTGTTAAAATGTCTAAAGAAGATCAAGATGATTGCAAATATTGGATTATTGCGTTGATAAACATGATTGTTTCTAAAATTGTGGTTAGCCAAACATAGTCATAACAAACGCTTCAAGAGGGACAGCCAACGCGTGGCATTTTTATTATGCGTTGGTCTTTGTGGTTACGGTGTTATGCGGCAGCTTGGTAGTAGCGTTGTCTGCCCCTTAAGCGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGGATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGACAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATAAAGTTTCATAG # Right flank : ATATTGGTACTTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGCGGCATTTTCGTTATGCATTGATTTTATTAGTTTTTAGTGCTATGCGTTCAGAAATGAATTCTGACACTGAGCTGTAAGCAGGAGTGTCTAGACAAACACATAACAAACGGCTCAAGAGGGATTGTCAACGCGTGGCGGCTTTAGTGCAAAATTGAAGTTCAGTGTTTACAGTGTGTTTTTTGAGTTCGGCTATGCGTTGTCAACCCCTTAGCCGGGCGTTATGCTTTATTGAGCCTCAGCAAAATCAATATATAAATTTTAATGGGAAAACTTAGTCTGATTTAGAAGTTTTCTTATTCTAATTTATTGATATTATGAGTTTATTATTCTTTTTCGTGGGTATTGAAAGTTGAACGATGCTCGTGCTTTTTTAGCCAACGCTGCTCTGACAAATTGTGTGCGTAAAAAGTTCGATTGATGCTGAAAGGTCTCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2383-2054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRTU010000045.1 Vibrio metschnikovii strain M29D Scaffold45_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2382 28 100.0 32 ............................ ATTTGAAAACGTTATTTTAACAATTCCTTTTC 2322 28 100.0 32 ............................ ACACAGCGATCGTGGGTTAAATATCTATTTTC 2262 28 100.0 32 ............................ ATCCAGCCGTGTGTATTTCATCATATAGTTGT 2202 28 100.0 32 ............................ AATCAGGACGTTGATTATCAAAATCAACATTA 2142 28 100.0 33 ............................ GTGAGCAATACATCACTAGATATGTAATGGCTA 2081 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GCAGCATATAACAAACAATTCAAGCAGACCCTCAACGCGTGGCATTTTCGTTTTGCGTTGAGTTTGGTGATTACGGTGTTGTGCGGAAAGTTGGTAGTTGCGTTTCGGGCTACTTAATTGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGAATTTTAAGTCATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAAGTTACTGATAGAGTTTCAT # Right flank : ATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGCAATGCGGTGAGTTGGCAGTTGCGTTGCTCACCCCTTAACGCGGCGTTATAAGCAAATTCAGCCCCAGAGGATGAAAAATGGAAATTGAGTACAAAGTAAACCATCCAATCTCAGTTGAACAATTCGTGAGTTTACTGAAGAAAACTTCATTGGGTGAGCGGCGTCCTTTGGATAATGAGTCAACTATTCAGGGTATGCTCGATAACTCTAATTTAATTGTGACCGCATGGCTGAACGATCAACTTGTCGGTGTTGCTCGTTCAGTGACAGATTTTCATTATTGCTGCTATCTGTCTGATTTAGCTGTTGATGAAAGTGTTCAATCCAATGGTATAGGTAAATATCTAATCTTAGTGACCAAAGAAGAGTTGAGCCCAAGTTGTAAATTGGTTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1055-1382 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRTU010000050.1 Vibrio metschnikovii strain M29D Scaffold50_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1055 28 100.0 32 ............................ GATTGAAGCTCGACACCAATACATCGAGCAAC 1115 28 100.0 32 ............................ TCGCCGTGAATATGAATTTGAATTAACTTTAG 1175 28 100.0 32 ............................ TATATTTAGGTACGATGTCTACTATTAGATCC 1235 28 100.0 32 ............................ AAACGCGACACTAAAAGTCATGTCTTCGTTAT 1295 28 100.0 32 ............................ GATGCTGGGGACGCATTAGAAATGACGGTTGA 1355 28 92.9 0 .............C..........A... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CGGCCAACTTTGCCCTGATAAATTGTGTACGCAAAAGGTTCGATTTTTGCTGAACGGTCTCTTCCTTTGGTGTTGTTTACCCATTGATTCCGCAGGCTAATTCGCTTCAACTTATTTGGGATCTTATTTGCACCAATGATTACTGAAAGTAGGCAAGTTTATCATTTTGAGTTAAAGTGGCTGCAACCGATAATCATTGTAAAAATTCAATGTAATCAATGAGTAATAAAGCATAACAAGCGCTTCAAGAGGGACTTCCAACGCGCGGCATTTTTATTGTGCGTTGATTTTGGTGGTTTCAGAGTTATGCGGAAACTTGGTAGTAGCGTTGTCAGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : AATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCGTTGATTTTATTGGTTTTTAGTGTAATGCGGTGAGTTGGTAGTTGCGTTACTCACCCCTTAACGCGGCGTTATGCTTTATTGAACCTCAGCAAAATCAATATATAAATTTTAATGGGAAAACTCAGTCTTATTTAGAAGTTTTCCTATTCTAATTCATTGATATTATGAGTTTATTGTTCTTTTTTGTGGCTATTGAAAGTTGAACGATGATTTTGTGTTTTTGTCGGGTTTCGCTCTGATAAATTGTGTACGGAAAAGGTTAGATTGTCGCTGAAAGGTCTCTTTCTTTGGTGTTGCTTGCTCATTGATTCCACAGGCTATTTCGCTTCAGCATGTTTGGGCTCTCATGAACATCTTACTTGCTGACAGTGTTTGGTTCGCGCAAGTTTATCGGCGAATGTGCGTTTTTATCCGGCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //