Array 1 2434029-2435705 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJUU01000001.1 Streptomyces sp. 840.1 Ga0299888_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2434029 30 96.7 31 .............................A CCAACTCGAACAACGCCTACGCCGTGGACAT 2434090 30 96.7 31 .............................C GTCCCCCGGCGGCGTCTCCGGCGTCACCGGC 2434151 30 96.7 31 .............................C AACAGGTCCGACCGGGGTTGACGTGTACTCA 2434212 30 100.0 31 .............................. GCGTCGGGACCGGCGTCGGGACCGGCCTCAA 2434273 30 100.0 31 .............................. ACGGCCGCGACGGTGGCGACAGCGGCGGCCC 2434334 30 96.7 31 .............................T CGCCTTCCAGGGTGTCGATGACCCGTGCGGG 2434395 30 96.7 31 ............................T. ACGTGCTCGGCCCGCTGATCCACCTGTTCAA 2434456 30 96.7 31 .............................C GGCCACACCAACTACGACGAGATCGCACACT 2434517 30 96.7 31 .............................C CGCCCACGCCGACGTGGCCGCCCAAGCCGAA 2434578 30 100.0 31 .............................. CCCGGAGCACGTCAGTGCGTCGGCGCGAGCG 2434639 30 96.7 31 .............................C CGCAGCTCACGGCATGTAACGCCACAGAGCT 2434700 30 100.0 31 .............................. GGTCGGTGGGATGCGGGTCTCTGATCCAGCG 2434761 30 96.7 31 .............................T ACGTCAGCCTGCACCCACGTGCCGGCGGTGC 2434822 30 100.0 31 .............................. TGCGGTGCGGCCGAGGACGGCAAGATTTGCA 2434883 30 96.7 31 .............................C GGAAATGGGCGGGCGGGGAGCTCCTGCTGCC 2434944 30 100.0 31 .............................. ACCTGCCGTTCATCGTGGGCGACGCACAATC 2435005 30 96.7 31 .............................T CGATCTGCACCGTGTCGGTGTTCACCCAGGC 2435066 30 100.0 31 .............................. GCAAGGCTCACAGCATTGACCACGACCACGC 2435127 30 96.7 31 .................C............ GGGCGCCCCATGCGCTCCACCGTGATGGGGC 2435188 30 100.0 31 .............................. CCTCGGCGAGGGCGTCGAGGACGGTCTCGGC 2435249 30 96.7 31 .....T........................ CCTTGGTCACCTGGAGCGTCCAGGCGTCCTC 2435310 30 96.7 31 .............................C TCAAGATCCTGTCCGCCGGACGACTCCAGGT 2435371 30 96.7 31 .............................C CGGCCAGGGTGCGGGCAGTACCGCGCTTGGT 2435432 30 96.7 31 .............................A TCCCTCCCTACCCTCTCTCCCCTCCCGACCC 2435493 30 96.7 31 .............................A AGGCTCTGGGGCAGGTCGGACGGGCCGGTGG 2435554 30 96.7 31 .............................A TCACCGTCACCGCCAGCGGCGGAGTGTAGGA 2435615 30 93.3 31 ........................G....T GCCCCGGCTGGGAGTGGCCACAGCCGGAGCC 2435676 30 80.0 0 ......G........A.T......GC...T | ========== ====== ====== ====== ============================== =============================== ================== 28 30 96.9 31 CTGCTCCCCGCGCGTGCGGGGATGAACCCG # Left flank : AGCCGGCACGAATCAGGATCGTCCTGGTCGTAGAACCCGATGAACCGTCGCCCGTCGTGGTGCACGACGACGGAGATGTGCTGCCCCGACTCGGTGGTGTAGTCATACTGCACTCCGACTCCGGGCAGCGTGGTGCGGTGGGTTCCCATGGCTTCCTCCCGAGGAGTGCGACGCTTACGAAACGCACTTGGTGATCTCTTTAGTCCCGCATTACCCTAACCGGACCTTCGATGGGGCCTTCGGGTTTGCGTTACGCCCGTGAGCGGGCGGCTCGCTGGGTGATGATTGCGCTGTGGCGGCGGCTTGCGCCGTGGGGCGGCCGGCTCGCTCGGGTCCCTTGCGTTTGCGGGCGGGCGGTGCGGCGGGGGTGCGGCTTGCTGGGTTCGGGCGGTGAGAGTGCGGACCCGGGTCAGCGATGGCCGATTTGCTCGTATATGCCGGACTTCACGAAGCTGCTTCAGAATGGCAGGATGCGCCCAGAGAACCCGAGGTCAAGCAGT # Right flank : TAGCCGACCTCGTTCGGGAGTGCACGCCCGCACCCGGGCCGCTGCCGGGCTGGGGTACGGGCGGGAGATCAGCGAGCCGGGCGCTGCGGGTACGACTGCGGATGCGTCCGCGACCTGGCGCACAGCACCCTGTGGACGTTGACCGTGGCCCCGGCGCCTGAAGCCCTGTCGATGTAGATGTGCTCGGCCTCGTCCGGCCGCATCAGCTGGTCGCAGCGGTCGCAGATCACCGGGCCTCCTGGGGGGTGGCGACGAGGCGGCAGCGGGCGACCTCTTCGTACTCGGTGTGGAGCGGCTCGGCTCGGACTCCTCGCCGCAGCCCGGGGTGAGGCAGCGGATCAGGATGACGGTCTGCGGTGCCTCTCCCCGAGGAGCACCGATCGTCCACTCCACGAACCGCATCACCGACCGGGGGGTCATCGGCGGATCTCCCGCCGGGCGGCCATGGGGCAGGGTGATCCGGCGCGGCAGGCGGCGCACTGGGCGGTGTGCCCGAGGAA # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGAACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2448505-2449022 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJUU01000001.1 Streptomyces sp. 840.1 Ga0299888_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2448505 30 100.0 31 .............................. TGCGGGAGAGGGCCGCACAGGGCGCCCACTT 2448566 30 100.0 31 .............................. GCTTCCTTGAAGGCTTTGGTGTTCCGCACCA 2448627 30 96.7 31 .............................A GGGTGGCGAGCATCCGGCGGACGTCGTCGGG 2448688 30 96.7 31 .............................A CTCGGGTGCCGGGGATCATCCCGCAGAACCC 2448749 30 96.7 31 .............................T GGCCGAGCTGCTCTTCGAACCCGCCGCTGTA 2448810 30 86.7 31 ..........T.............G.T..T CAAGATCCAGATCCAGACCCGCCGCACCAGC 2448871 30 96.7 31 .............................A GATTGTCCCCGCCGTCACCGGTCAGGTGGCA 2448932 30 100.0 31 .............................. CGAAGGTCAGCGACGCCGACCTCCTGGACGC 2448993 30 93.3 0 .........................C...T | ========== ====== ====== ====== ============================== =============================== ================== 9 30 96.3 31 CTGCTCCCCGCGCGTGCGGGGATGAACCCG # Left flank : GGTTTCCTCACGCGCTGGCTCCTGGAGATTTCCCCGGGCGTCTTCATCGGCGGCCCCTCTACACGCGTGCGGCAGGCATTGTGGGCGGAGGTCAGAAAGTACTCGGGCCAAGGACGGGCCCTCCTTGCGTACAGCGACAACAGCGAGCAGGGATACGCGTTCGAGACCCACGACCACAAGTGGCACCCGGTGGACCACGAGGGCCTCACGTTGATCCTCCGCCCGAAGGACAGGCCTCCGCCCGCTCTGTCACCACCCACCAAGGGCTGGAGCAAGGCCGCGAAGCGGCGGCGGTTCGGGGGGCGTTGAGGGCGGCGAGACTCCTGTTTCGCGGGGGTTGCTCGCCCCAGGTTCCATCGCGGACACCCCCTGCTGCCTGCGCACGTCAATGACCGAAGCGGTGGCGTGCCTCGGAGGATGACGAAAGAGGCGAAATGCCCGAGTTGCTGAAGCTGCTTGAGTCCAGCCAGCCCGCCGGATAAAACCGCAGGTCACGGAGT # Right flank : TAGGGCCCCTAGGGGTCCCGCCGCGCATATATGTAAGGAGCCCGCGGCTGCGGTCACCGTGTACAGCCGCTGGCCATACCTCAGGAAGCCCGTACCCGGTCGGGCCACGGCGTGGCAGGGCGTACTCAGCCTCGCCGTAACGCCCGTCGAAGTGGCGACTCATAACCAGGTGCCAACCGCGGAGCCCTGCAGTCGGGGTCGTCGGCGGGGTGCGCCCAGGCATCAGGTCGCGCTCCGCTCATGGAATCGGAGTGGTCGAGTCGGACCGCGTCACCGATGATCAGCTGGTCGCAGCGTCCGCAGATCATTTCCGGGCCTGCTCTGCCTCGCGAACCACGCAGACGGCTACGTCCGAGCAGGCTCGCGGGAACCACGAGTAGGCAGCCCCATCGCTCGGCCGTGCACGCTGCTCGCCCAGGTCGACGTCCGCGCCGACTGTGAGCGGGTACCGGCACCAGACGCACCGCCATCCGCGCTGTTGCTGCATGGTGAGCTCGTTG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGAACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //