Array 1 173942-177392 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPND01000011.1 Pragia fontium strain DSM 5563 Scaffold11_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 173942 28 100.0 32 ............................ CATAATATTCCCTTATCCTTTCTGCGTTTCCC 174002 28 100.0 32 ............................ AGAGGGATTCACTACAGTAAGTATCTGCTTTA 174062 28 100.0 32 ............................ TCTTGGTATCCCGGCAGCGCTGATTTCGGTAG 174122 28 100.0 33 ............................ TGTGCCGTTGGTGCAATGATGGTTATGTTTGCT 174183 28 100.0 32 ............................ TATCTTGGCAATTATTGCCCTGATAGCTATGG 174243 28 100.0 32 ............................ ATCCTGTATTGATATGGTCAGGACAGTAGCCG 174303 28 100.0 32 ............................ TGTTGCCAGCCGAACTGGACTATAAGGCTCTG 174363 28 100.0 32 ............................ TCAATCTCTTCAGGTGTATGAGGGATGTTATG 174423 28 100.0 32 ............................ GGTTGGCGAAAGGTCGGTCATCGTTGGCCGCG 174483 28 100.0 32 ............................ GTGCCATTTAAAGACCGCCAGAACCCGGAAGC 174543 28 100.0 32 ............................ TTCACAAAAGAATCATTGATAAGCTCACCTTT 174603 28 100.0 32 ............................ TTGGTGGAAAACGTCCTGCGGATACGTTTGCT 174663 28 100.0 32 ............................ TTTTCAGTCTGCAATTGATTTAGTCAAAGGCT 174723 28 100.0 32 ............................ TTACAGAAAGTCACCGCCGCGAACTGACATCA 174783 28 100.0 32 ............................ GCTCTCAAGAGAAGAGCAAATAGTCATCGCTG 174843 28 100.0 32 ............................ AGCCCACGCACCAGCACTAACAATTGCGTCAC 174903 28 100.0 32 ............................ GACAAAGAAGGCCGACTGGATGATCGCCCTAA 174963 28 100.0 32 ............................ GACCGAAAGCGCTACTTTTATTGTTGAAAAAA 175023 28 100.0 32 ............................ AAGGCTTAGGGAATGCACACCGCCCTATGATT 175083 28 100.0 32 ............................ CATTAACTCAGGTTAAGGATTATAAGGATGTA 175143 28 100.0 32 ............................ TTATTAATTAACACAGGCACTCCAGCGGGGGT 175203 28 100.0 32 ............................ GTCCTGATTACCCGCCAGCCACCGTAAATAAC 175263 28 100.0 32 ............................ ATTACGAAATTAATTCCTTGATAAGTTTGAAA 175323 28 100.0 32 ............................ TGACCCGGCATCATTAGCCTTGTTAGTTACAG 175383 28 100.0 32 ............................ TTTTACTTATGCTGTTGCTGATATTAAAGACC 175443 28 100.0 32 ............................ AAGACGCTCCAGTCGAACGATTTCAGTATCAA 175503 28 100.0 33 ............................ TGTCAGCTCTGATAACTGGGCGTTTCCAACCCA 175564 28 100.0 32 ............................ AACAGGACAAATTATTACAGATGATGGACGCA 175624 28 100.0 32 ............................ GCACATCACCAATCCACCGCCATTACTAAGTC 175684 28 100.0 32 ............................ GACTAAATTCCGAATTATCGACACTGAAACCT 175744 28 100.0 32 ............................ GCTACGTGCCGCGATGATAGTCTTCCTGATGA 175804 28 100.0 32 ............................ TTGATAGAAATGCCGGTGCGGTTCTGAAAAGA 175864 28 100.0 32 ............................ TAAATTTCATGCCTCGCCTTTGCGGGGCTTTT 175924 28 100.0 32 ............................ TTAAGAACGTCAACGACCTCTTTACCGTAACC 175984 28 96.4 32 ...............A............ TTGGGAAAGCGTAGTAACAGGGCTATACAATA 176044 28 100.0 32 ............................ AAACAGTGTCTTTAAGCAACGTGTTAACGCGC 176104 28 100.0 32 ............................ ACGACCGGAACTCTTCCACATTTTCTAACATT 176164 28 100.0 32 ............................ ATTATGAGGATCGACATAACGAACATGGATTG 176224 28 100.0 32 ............................ CAACGGAATATTTGCTGACGATTGTTATAAAT 176284 28 100.0 32 ............................ ATATTGCGACCGGCTATCTTACCGACTGTTTT 176344 28 100.0 32 ............................ GCACTTAACTCAACGTTCTTAGCATCATCAGC 176404 28 96.4 32 .........T.................. TAAATGTTCCCAATACTCACCTAAAGGGAAAT 176464 28 100.0 32 ............................ GACCGCCCCAACTGCCACCTAAATGTTCCCAA 176524 28 100.0 32 ............................ GGTATAAGCATCCCGATCAGCAATACGAAAAT 176584 28 100.0 32 ............................ AATACACTCTTGAACGGTTAGCCAAATATCCA 176644 28 100.0 33 ............................ GAAGCCAACGGCATCGATACAACGAGCCTCAGA 176705 28 100.0 32 ............................ CACATGGGGCAACAAGTCTTTCTCACTCTCTC 176765 28 100.0 32 ............................ GACTGAAGTTAAACAATGCGCGTCCTCTGTGA 176825 28 100.0 32 ............................ TTTATAGATATGTGGGATCGTTAATGAAAACA 176885 28 100.0 32 ............................ GCTCAGAAATTCTACGTAATGCCGATGGCTCA 176945 28 100.0 32 ............................ TATAAGCCGCAATTACAGGAAGGCTCTGGCCG 177005 28 100.0 32 ............................ GACCAAAGTACCTCTAACGGATGCAGGAACGG 177065 28 100.0 32 ............................ CGTGAGCATATCGAATATATCCAAAATTATAT 177125 28 100.0 32 ............................ AATACAGACTGGGGCCGGCCTTATTTACCCCG 177185 28 96.4 32 C........................... TCATCGAAAGCAACCTACCGCCTCGAACCGCT 177245 28 100.0 32 ............................ TGAGTCGTAAGGGCAGAAAAATAACGAGCCCT 177305 28 100.0 32 ............................ CAGCAACAAACGCTTCTGCAATTCGCAAAATA 177365 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 58 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGTCACCTACGTGAGCTTTGTGCGTAAACAGGTGAAATCGCCAGAGCGGATTGAGCGCGATATGCAGCAAAAATCGGCATTGTGGGCAGCTAAATCGGGTAAATCGCTGGCAGAATGCTTAATTGAGCTTGAAAAAAGTAAACCGACCGATCTATGTCGCTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAGCGCTCGCCAGATAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCATCCGCAAAGTGCATCGTTGGATGGGGTGTTTGATTGTTATGGCTTGAGTGCTAAGGCGAGTGGTAAGCCAGCATTTGCCACCGTGCCGCACTTTTAAACTCAGGTATAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATATTATTTAAATACAATGGGTTGCAATGCGCGGTTTTTAACAAGGTAAAAGTGCGATTTTTATCCTAACTGCTTGTTGTAACTTATTTTTATTGATTTATTCTATT # Right flank : AGGTATGAAATCAAACTATTCATCATCTACGCAGCATTGCGACAATATGTATCGTTTACAGTTAATCTCGAGAGTATTGGCGGCAAAGAGCCGCCATGCATCAACAATAATTGTTAGGAAGGGAATGTTAAGAAAGGTATTTGTAGTTTGAATCGTCCCCGTACCTCATATCGTACCCATCCCAATTTCTTCTACTTTAAATTATCGGTGATAAGCCTTATTTAATGCGCTCTAGAAGTACACCCGATTCCATATGATGGGTATAAGGGAATTGGTCAAATAACGCCAGTCGACTCACCCGATGAGTTTGGTTGAGGACAGTCAGATTTTCACATAGGGTTTCCGGATTACAGGAAATATAAAGAATTCTTGGGTAATCCTGAACCATGGTGACCGTTTGCGGATCGAGGCCGCTACGCGGCGGATCGACAAAAATGGTTTCGCACTGGTAGCTGGTTAAATCAATGCCTTTTAGTCGATTAAATTCCCTGACACCTTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 222381-222233 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPND01000001.1 Pragia fontium strain DSM 5563 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 222380 28 100.0 32 ............................ AAAGCGGTCGGAGTCAGCATTAACACGCTCTA 222320 28 100.0 32 ............................ ATAACGGGTGCTCTACGGGTGCTCTAACGGGT 222260 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 CTGAACCGCCGTATAGGCGGCTTAGAAA # Left flank : GTATGCGGCATTTGTGCGTAAACATAGCAAAAGCCCCAGAGATATTGATAGAAAACGTCAATATTTGCTTAAAAAAGCCGGTGGTGAATGGAATGATATGGCCGAGAAAAGCCTGAGTCGTTTTATTGAGAAGTTACGCTGTCAATTGCCGTTTATCCATCTGGTTAGCCATAGTTCTAAACCGGCAGAAGACGGGGGAAAAAATTATTTCCACCTGTTTATCAACAAAGAGACTGGCGAAGTGCAGCAAGGAAAGCTGACGAAATATGGGTTAAGCGATGCGCAACATCGGACAACGGTTCCTATTTTTTGACCGAATAAATTGATGTTCTTTAAAAAAATAGCGTTAACTTAAATAAACCCTTTTTTTAGCGATGTATTTTCGTTTTATATAAAACAATAAGTTACGATGACCGCTGAAAAAAGGGTATTTTGACTTAATTTCGGATAGATGTCTGATATTATCGGGGCTGTAGAGGGATTTATTGGTAAAATTTCTA # Right flank : ATACGGGCGCTGTAATCTATTTGCCATGTTTCCTGAACTGCCGCATAGGCAGTCCAACCCACAGTCATAAAACCAGCAACTCTTTTTATCTTTCCTTTATGTAAATCACCGGGTTTTTCGCTACATTGACGACGGCTTTTGGCTTTAATCCCTTATTTATCGTCATCTCAGCATCAGATCGCACCTTGATCCACCGCATTTATTTTCCGTGCTGTTATACTTAATTCATTCACCTGACAGGAAAGTCAGTGTCGGTGTATCAGGATAGATATCAGACTATTTGATTTATTGAGGGAGAAAAAATGAAGTCGTTCATTCTTAAAAGTATTGGTGCCGCCTGTATTGCGTTAAGTATGGCAGGATGTGCCTCTAATATTTCTTCAGATTCTTATTCTGATCAGCAGGTTGGTCAGGCTAGTCGTACCTTTGCCGGAACTATTGTTAGTTCCCGAGTGGTTAACGTGGAAGGTAACAACGAGGTTGGTGGGCTGGTGGGGTCT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACCGCCGTATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //