Array 1 774336-772252 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN050647.1 Listeria monocytogenes FSL F6-684 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 774335 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 774269 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 774203 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 774137 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 774071 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 774004 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 773938 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 773872 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 773806 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 773740 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 773674 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 773608 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 773542 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 773476 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 773410 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 773344 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 773278 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 773212 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 773146 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 773080 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 773014 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 772948 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 772881 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 772815 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 772749 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 772683 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 772617 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 772551 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 772485 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 772419 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 772353 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 772287 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 2570787-2570046 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN050647.1 Listeria monocytogenes FSL F6-684 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2570786 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 2570721 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 2570656 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 2570592 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 2570526 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 2570462 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 2570399 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 2570335 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 2570270 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 2570206 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 2570140 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [2570116] 2570074 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : GAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //