Array 1 16919-17215 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKYH01000050.1 Staphylococcus felis strain F30 k127_94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16919 36 91.7 29 ...........G.......A...............T ATAAGCATGTGACTAAGAAAAGAGGAATA 16984 36 97.2 29 .........................G.......... TCTCGTGATGGTGAGACCAATGTTTTGAG 17049 36 100.0 29 .................................... TTGATTTCACATTACATTAACCAAGTGAC 17114 36 97.2 30 .................G.................. AGACAGAACTCGAAAAGGAATGATAGGGCA 17180 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.2 30 GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Left flank : AAGTGAAATTAACAAAAGGAAATTATTTATCGATTTACTTAAAGACGATGATAAAGAAAATGTATTACTTATATTGTACCCAGAAGCATTTTTGGGGCTCAAAGATATTCAAAGATTTCTACAATTGATTAAAGGTTATCAACTCACAACCATTATAATTACAAATCATCCATCTATTATCATTGAGGAAGAAAATGTTTATTTATGCAAAAGCAATAAAGAGTGTCACTCAATCAAAGATATAAGGGAAGATCTAGAAATTCTTATGCCACAAGAAACAATTAATGACAAAACGGTTAGAATGATTGCTTATCATGAATTCATAGGTACAGATTTAAAAGAACTAGCACGATACTTTGAGTTTATTAATGATTACAATTAAGATATAATTGAATTTACTATGATAAATTAAAAACAACAAGCTTTATTCAATGTTTAACTTCTTAACTAAAAAGCTAAAACCTCAAAATGGTAAAAACTATAGTGTGTATTTTTGAATT # Right flank : GATACTATGACTTTACTTTCAATTGAAAACGTTTTAGAACTAT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 5484-4659 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKYH01000015.1 Staphylococcus felis strain F30 k127_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5483 36 100.0 30 .................................... GATACTATGACTTTACTTTCAATTGAAAAC 5417 36 100.0 29 .................................... TACCGATAAATCATTTCCAAAACCTTTGT 5352 36 100.0 30 .................................... CCCATTTCGAGGGCTTTATCACGTAACTGT 5286 36 97.2 30 .........................G.......... AGCTAATGGACAGGTAACTAGTACGATAAA 5220 36 97.2 30 ............C....................... ATATACAATATAGGCGGGAATATACCTACG 5154 36 97.2 30 ..............G..................... GATTCAACACTAAACGCAAAGCGAAAGATA 5088 36 97.2 30 ..............G..................... TAAGCTGTATGGCGAGGCGATTACATGCAA 5022 36 100.0 30 .................................... TGTTTATCAACCCGTTAAAACGCCTATGGG 4956 36 91.7 29 A...........C.............A......... TTTAAAGACGGAGATAAACAATCAGGTCT 4891 36 94.4 30 ......................A..G.......... ATCAGTATTAGATGAAATAGCAGAGGAGTT 4825 36 94.4 29 ........G................G.......... ATAAGCATGTGACTAAGAAAAGAGGAATA 4760 36 94.4 30 A........................T.......... CACTGCTGGGCAGTGTACTTGGTATGCATT 4694 36 88.9 0 ........G................T......T.C. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 96.4 30 GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Left flank : TTTAGAAAGAAGTAAAACAGACAGAACTCGAAAAGGAATGATAGGGC # Right flank : ATTTTTTCTGAATTTTTAGATATAATGATGATACTAGAATGACCAATTGATAATCAATAATCGAGAAATCTTAATGATACATGTCTTTTCTTTTCATTGATATAATGAAATGATATAGTCAAATATTTTTTAGAGAAAATTGTTTTATTTTATTAAGAAAGGGGAAGTTCGATGAAGTCTATTATTGCAAAACACGCTTTTAAATTGTCAGATGGGAATTTATTTGAAAAAGTGACACGTGAAAAACCAATAGTGAATACTCATGAAGTAGGAATAGCTGTTCATGCATCAGGTGTGAATCCGATTGATACAAAGACGCGTCAAACACCACTTCAGACTGAAGCACGTGTATTAGGATATGAAGGGGCAGGTGTTGTTGAAGCAGTAGGTGAAGATGTGACACGTTTTAAAGTAGGGGATCGTGTGATGTTTGTCGGTGCACCTAAATGGGAAGGGTCGAATCAAACTTATCAAGTATTAGATGAAGCGTACATGACGCA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //