Array 1 83585-80904 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJMM01000004.1 Streptococcus sanguinis strain BCC31 D8886_contig004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 83584 36 100.0 30 .................................... ATATTTTAACTACGTTCCTAAAGACCAATA 83518 36 100.0 30 .................................... TTGACACTTTTGTAGCTGAGAACTTTTTGG 83452 36 100.0 30 .................................... CTCTGCAGCTGAGAAATAACCATTACCCAA 83386 36 100.0 30 .................................... TCCTTTGTGGATCAAAGAACCACATCCAAA 83320 36 100.0 30 .................................... TGGCTTCGCTATACTCTGTTAAAACGTCAC 83254 36 100.0 30 .................................... TTATTAAAGGTCTCAACATCAAAATAGATG 83188 36 100.0 30 .................................... TTATATCACAGCTGATGAATTGGACTACAT 83122 36 100.0 30 .................................... CGTATTTTTTTTTTTCTAACCCCGTGTTAC 83056 36 100.0 30 .................................... GGTAAAAACTGGTGGGATAAGCTTTTATCT 82990 36 100.0 30 .................................... ACTAAAGGAGTATGGAATGACCGGGAGCTG 82924 36 100.0 30 .................................... ATTCGTGGTGCAGCTTAATTTAAAGGGCTT 82858 36 100.0 30 .................................... CGGTTGATGTTGCTCTTGCAAATCAGACTT 82792 36 100.0 30 .................................... TTGATGATATATCTCGTATTGATGTTTGTA 82726 36 100.0 30 .................................... TCTCTAAGAGCAGCCATCTCAACAGTCATC 82660 36 100.0 30 .................................... CATTTTCTTTCCAGTTCTCGACCTTGTAGT 82594 36 100.0 30 .................................... AATCGCAGAGCTAGAAGCTGACACAGCAGA 82528 36 100.0 30 .................................... ATAAGAGTCATGGCAGAATACAGACCGGAT 82462 36 100.0 30 .................................... TTAATGCGGATCACATGCGAAATCTTCCAA 82396 36 100.0 30 .................................... AGAGGACGGGTGATGGTACGGCTAGTAAGT 82330 36 100.0 30 .................................... TATAAGAGGTTTGATTAATGGTTAATGTGT 82264 36 100.0 30 .................................... ATGTGTGTATGGATGTTAGACTTTCTTCTT 82198 36 100.0 30 .................................... GCTATCCAATAGACGTGCAAGTGTTTGCTA 82132 36 100.0 30 .................................... TCGCTCAAACTGGAGCAATCAAGGCGGCTA 82066 36 100.0 30 .................................... ACTTACTAGCTAAAATGCCGAAAAGCTCAA 82000 36 100.0 30 .................................... AAGTCGTTCGGAAAGGCGTTATTTACTGGT 81934 36 100.0 30 .................................... TCTGAACCCTGCGGCTGCCGTTGTCATAGC 81868 36 100.0 30 .................................... GCCCTGTATTCAATTTTAGTGTCTTCTGAG 81802 36 100.0 30 .................................... GAACTAATTAAACTGAGAACAGAGATAAAT 81736 36 100.0 30 .................................... AGCAAGTAACCTAGTCATTCATAGCCTTTT 81670 36 100.0 30 .................................... TTCTTTTCGAAGTTATCTCGGTTTTCGTAA 81604 36 100.0 30 .................................... CATAGAGTTTCAATAGCTGCTTACGACTAT 81538 36 100.0 30 .................................... CTTGCAGAGCGGATAAAGTTAATTACCGCG 81472 36 100.0 30 .................................... TTCAAGCAGTATATTTCACAGAAGCCATTC 81406 36 100.0 30 .................................... CTGACAACGCCAATAAGATGGGTACCTCTA 81340 36 100.0 30 .................................... CCGTAGAGGGCAGCACAGTGACGAGCGGAA 81274 36 97.2 30 .............................N...... CTGCTTATCGTGATAATCATATCCGTGGCA 81208 36 100.0 30 .................................... TACAGGAATTAAAATTGATATTGGCTCTAA 81142 36 100.0 30 .................................... TTTAGAACAAGTGATTGATGATTTGTTAAA 81076 36 100.0 30 .................................... GATATAAGGGAAATAGTCAGATACAGTGGC 81010 36 94.4 30 ..............................T....T TTAAATCAAGTTGCACGTACAAGGCCAATA 80944 36 86.1 0 ......................TT.T....T....A | A,TA,AT [80909,80911,80916] ========== ====== ====== ====== ==================================== ============================== ================== 41 36 99.5 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAACTCAATGACAAGCCCGAAGTTAAGTCCGTGATTGAAAAGTTGGTTGCTACGATTACAGAATTGCTGGCATTTGAGTGTTTGGAAAACGAGTTAGACCTAGAGTATGATGAAATCACCATTCTAGAGTTAATCGATGCACTTGGTGTCAAAGTCGAAACTCTAAGTGATACACTTTTTGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAATATCTTTCTAAAAAGAAACTCCTTGTTTTCATCAATGCATCTGCCTATCTATCAAAGGATGAGTTAGTAAATTTGATAGAGTATATCCAACTTAATCAACTGTCCGTCTTGTTTGTTGAGCCTCGGAAAATCTATGATTTTCCGCAGTATGTATTGGATCAAGACTATTTCTTGAACCCCGAAAATATGGTATAATTAGAGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : GGACTGTTTTGTCAAGCCCCAGATAAACTGGACAGTAAAAAAGTACATTATTGATGAAGGTATGACTCCCTGAATTCCACAGGGGTCATACCTTTTAATTTTTCTTGCGGTCTATCAAAGTTATACCACTGAATATAGTAGCTAATTTGTTGGATTAACTCATCTCTAGTTTCTGGTTTGTGAAGGCTAAGTGACTCACTCTTTAAATGGGAGAAGAAATTCTCACAACAAGCATTGTCATAACAGTTTCCTCTTCCTGAGTGAGAGATTGTTACGTCGTAGGCATCTAATTTTCTTAAGTATTGGACGTTTGTATATTGAAAGCCTTGATCTGAATGGAGAATACACGATTAGGTCGTATCCCATGTTTCATTAAAGAGCAAATCTAAATTATCAAAAACAAGACGATTATCATTGAAATCGGAAAGCTGATAGGCTAGAATAGAGTTGTCATATAAGTCTTTTATGACACTTAGAAACATCCGTCCATTTTTGTAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //