Array 1 24177-23538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLQE010000025.1 Escherichia coli strain KG-55 NODE_25_length_32870_cov_13.611856, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24176 29 100.0 32 ............................. ATTCTGGCACCCGGCCAGATTATCCGCGAAAG 24115 29 100.0 32 ............................. GGTAGCGGCACAACTGGCGTGGCGGCAACGCT 24054 29 100.0 32 ............................. CCCGGAGTTTATTAAATGGCGAAAAATACAGT 23993 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 23932 29 100.0 32 ............................. AATTAAATGATTTTGATGCGCGCCGACTTGAA 23871 29 100.0 32 ............................. TACGCCCTGGCGGAATCGCCCCTCGCTCTCAA 23810 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 23749 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 23688 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 23627 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 23566 28 72.4 0 .AA........C..T....T-.G.....C | C [23541] ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 131-1501 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLQE010000328.1 Escherichia coli strain KG-55 NODE_328_length_1590_cov_12.470267, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 131 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 192 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 253 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 314 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 375 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 436 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 497 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 558 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 619 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 680 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 741 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 802 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 863 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 924 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 985 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 1046 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1107 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1168 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1229 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1290 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1351 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1412 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1473 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //