Array 1 82001-80753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNZY01000021.1 Streptomyces katrae strain NRRL B-16271 contig21.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================================================= ================== 82000 29 93.1 32 ..............C..........C... ATCGGGCTGTTCTCCCTGTCCGTGGCCCAGCG 81939 28 93.1 33 ..............C..........-... GTGGACCAACGGCGTCAAGCCTGCCTTTGACGG 81878 29 93.1 32 ..............C..........C... AAGCCGGCCCCGACCACGCAGGCCCCCGCCGA 81817 28 93.1 144 ..............C..........-... GCGATCACAGCCGTGTCAGCCCCCGCCGCGACTGCTCCCCACCCGGATTGGAAGCCTCCCGAGGGTCTGAACCCGCGATCGCCGGATTCCGCGAAAGTGCTCGAGAGCGGCGCGTTGGCCCCATAGAGTCCCTGGTCACAAAGA 81645 29 96.6 32 ...........A................. CGGGACGAGATGCAGTTCCGCATGGACCAGGT 81584 29 93.1 32 ....G.G...................... CCGGAGCGCTACGGCGTCCGGGACGGCGACTG 81523 29 100.0 32 ............................. GCCATTCTGTGGGGTAACAGCGGCTCCACATC 81462 29 100.0 32 ............................. GTCCAGACCATCGTGTCGGACTTCGGCACGCT 81401 29 100.0 32 ............................. ACCCGCGGCAACCGGCCGATCGACCCGAAGAC 81340 29 100.0 32 ............................. CGGTACACGATCGCGCAGGGCGAGGTCGACGA 81279 29 96.6 32 ..............C.............. GCTGCCCGGAAGCTGCGCGCAAAGACTGGTCG 81218 29 100.0 32 ............................. ACCGCCGTCAGCACCGTGTTGGGTTGGACGGC 81157 29 96.6 32 .................T........... AACCGGCCCATCCGGCGCGGCCGCGCGCCCGG 81096 29 100.0 30 ............................. GTCTGTCGTCCGCGGCGTACGCGGCGATGT 81037 28 89.7 32 .....T.......-...........C... GACGGCCGGCCGGGTGGCATCGTCGGCATCGA 80977 29 93.1 167 .......G.................G... CGAATGTCGAGGCCGCCCTCCAGGAAGCGCGGCGGGTGGTGTCTGCGCGGGCGGCCCGGATGAAGTCGCCCTCGCCGGCGCCGATGTCGTCCGGCCGCATCCACGCCGACTCGGTCCGGACACTCGCTCCCGCCGAAGGGCACCGCCGGCGGAAGCCCCCGACGCCA 80781 28 69.0 0 .......G.C...-...C.CC.A.CG... | C [80759] ========== ====== ====== ====== ============================= ======================================================================================================================================================================= ================== 17 29 94.5 47 CTGCTCCCCGCGCATGCGGGGATGAACCC # Left flank : GTCGATCCGCTGCAAAGTCTCCCGATCCGCATCGGAGAGCCTTTCCCGCACCTCGACCATGTGCGGCCCCTGACACCGGGGCCACTCCTCATCGCCGGGCCACAGCATCGGACCACCGATATGACTGGCATCCGATGATGGCTCACCCGCCTTGGGACGCAGCAGCACGGCCTTGCGGGCGTACGGGGCAAGGGCGGGTATGCCGGCGAGCAGCGCCTCGACGGTCGGATCCACGGCTGTCATACGGACGACGGTAGTAGCTGTTGCCGGCACCCCGTTCGAACCGGGCAGGGCGGGTGGTGTCGCACAACGGCGGGAGCGCCTTGTTCGGCAACCCCCTGGGGCACCGGAATCCACGGCAGGGCCGATTCGGCCTGAGGCGGGTCTGAAGGTTCTCGCCTACCCGCCTCGACAGTACTCGCGATATGGGTTGAATGCCGGTTACGGTGAAAGTGCTCGAGAACGGCTCGTCGACGGCATAGAGTCCCAGGTCAAGAAGC # Right flank : ATCTGCGACGCACCATCGGCGCCCCCGACCTGCGGATACTGCGGGATCGAACTGCCCAGGACCCCGGGGAAGAGCACGCCGTCCTGGTGTTCCCCACGCTGCCGCCGGATGGCGCACCGCCAAGGAGTCGAGCGGCCCCCCGAGCCACCGGCCCCGACCGCCTCCCCGGCGAAACTCTGCACGAAGTGCGGCGAGATCATCCACTGCATCTCCATGAGCCGCCGCGGCCCGGCCGACTACTGCCAGCGATGCCGAGACCAGGACTACCTCCAGCGCCAGCAGAACCCCGCCCAACCCCTCGCCGGCCACAGCGTCCCCACAGGCCCGACATGCGGCTTCTGTCGCACCTCCATGCAGCCGGCCTCAGCAGCCCGACGGTGGTGCTCGCACGCCTGCCGACAGGCCGCCTACCGAGCACGGAAACTCGGTGAGCTCCCGGCGACAGCTCTCTCCCGTCAGAACCGAGCGACCTGAGGCACCAGCGCCCGGTTCGACGAAGA # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.68, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGATGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 86507-86240 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNZY01000021.1 Streptomyces katrae strain NRRL B-16271 contig21.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================== ================== 86506 25 100.0 36 ......................... CCCCCGAAATCGAGCGCTTGTGACGGGACCGCTGAG 86445 25 100.0 36 ......................... CCCCTCCATCCCCTGGCCCTTGTCGTCCTGGTCGGC 86384 25 100.0 36 ......................... CCCCCGGCTGACCGCGGCTGACTTCGACCTGGCGCA 86323 25 100.0 34 ......................... CCCCGCTGCTGTCGAACTCGGCCCGTTTCCCGTG 86264 25 84.0 0 ..............T.......AAG | ========== ====== ====== ====== ========================= ==================================== ================== 5 25 96.8 36 ATGCTCCCCGCGCCCGCGGGGATGA # Left flank : GTCCACACGTTTGTCGTTGATCGGCGGAGCCCGGACCTCGACCGGTCCAGCGCGGCGGTGGTGACCTTCCTTGGGTGGTAGCCATTGCGCACGACCAGCTGGCGGCCGTTCTCATCCCGCTGATCGGATAGCTCGGCTATGTAGGAGTTGACCTCGGCCTCCAGCGAGGCGGCCCACATCCGGCGTGCGCCCTCCCGGGCGATCTCGTCCAGCAGCGATGCCCCGCCAGGGGTGGTGCCGTCAGTGTTGACTGCGGTGAGCACGGACGTGCCTTCCCGGCCGACGCGCCAAGGTCGGCATTGCCCGGAGACCTATCGATCGATCACCAGGGAAGGTACGTCCTCCCCGGACCGATCCACAGGTTCTGAGCATTGCTCCACTGGGGTGACGTCTGCCTGCCGTCCGCGGCGGTAGGCAGTATCGATATAAGTTGAATGCCGGTTTCGGTGAAAGTGCTCGAGAACGGCACGCCGAGGGCATAGAGTCCCAGGTCAAGAAGC # Right flank : CGGCGACTCTCATGATCCGGTTGGCGGGCCAGGCCAGCGGCCCAGTGGCACGGCCGATTGCGGCAGCAGTAATCGCGTTTCAACCTCCGCGGCCGCCGCGCCGGCCGTTGCCGCCCTCCGTGCCATCGAACACGGTTGCGGGAGCTAGGTGAGATCCTCCATGAATGAACGATCTCGGCGACGCGCACCTGCGCACCTGGACGCTGCACTTTATGGCCCTCCTGGCAGCCGACACCCAGGATCAACTTGCCTGGGCTGGGCAAACGTGAGCTGGAGACGAGGGACGTTGTTGAAGAGGTGGAGCTCCTGTGCCGCGTCTCCGAAGGACTCGCGGCGCGCGGAGTCTTCGAGTCCGAGGATCTGCGCGGTCTTCGGCCCATCGGCCGTCGACTCCGCGAGATCGATGTCACCTGCCGCGTCGGACTCTGGCACAACGCCCTGGCCACGGACTCGGCGTGGAACGATATACGTTCTCTCGCCCGCCGGTTCCTCCTCACGAG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCCCGCGGGGATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31758-29897 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNZY01000046.1 Streptomyces katrae strain NRRL B-16271 contig46.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31757 29 100.0 32 ............................. CGACGTACCGTCACCGGGACCGTAGACGACCT 31696 29 100.0 32 ............................. TTCGCATGGGTCACCGCCCACACGTCCGGCTT 31635 29 100.0 32 ............................. GTCGGGAGCCGGCACCGCGGGCGGCGGCAGCG 31574 29 100.0 32 ............................. TCGGGGAACCGGGTCACGGCCGTCACGCGGCA 31513 29 100.0 33 ............................. TGCTGATGTACTGCGTGGTGCCCATCGCGGGCG 31451 29 100.0 32 ............................. TCGGCGGGACCGGCTCCAGAAGGATCGAAAAC 31390 29 100.0 32 ............................. TGGTACCTGTGCCGGGCGGGGAGGGCTCCGTG 31329 29 100.0 32 ............................. CGGAGCTGCTCGCGCGTGAACTTCCAGGGCCC 31268 29 100.0 32 ............................. CGGTCCCCGTTCGCGGCTGCTTCGTCCACGCG 31207 29 100.0 33 ............................. CATCACAGTCAGTATCGAGCAACGGATCGAAGC 31145 29 100.0 33 ............................. CACGGAGCGGTGCCTACCAGGGGGACGGCGCTG 31083 29 100.0 32 ............................. TGCGGAGCGCGCACTTCGCCTTCCGGCCGCCG 31022 29 100.0 32 ............................. TACCTGGTGCTCACCGAGGAGGACGGGGAGCC 30961 29 100.0 32 ............................. CTGCTCCCAGACCGGCAGGACGGACGGGACCT 30900 29 100.0 32 ............................. ACGCACATCACCGTGTCGCACGCGTCCGGGTC 30839 29 100.0 31 ............................. AGCACTGAGCAGTGTGCAGATCTAAGCGTGG 30779 29 100.0 32 ............................. GCCCCTTCTGGCGGCGCGTTGCTGGCGTTGGC 30718 29 100.0 32 ............................. GTCCCGCTGCTGTTCGGGGTGTACGGCGCGCT 30657 29 100.0 32 ............................. TGCTCTTCCAGTCGCACGCGGCGAACATGGGT 30596 29 96.6 32 C............................ CAGACCCCCTATCCCCAGATCTGTGCAGCGGC 30535 29 100.0 32 ............................. CAGACCATGTTCGACAGTAATGAGTCGACCTT 30474 29 100.0 32 ............................. GTCTTCATGGACAGCTGCCGGGTGCCGATCGC 30413 29 100.0 32 ............................. TCGTGACGCCGCTGAACGTACCGGGCGGGACG 30352 29 100.0 32 ............................. TGCGACAGCCACGACCGGGAGCGGCCGAGGAC 30291 29 100.0 32 ............................. CACGGTGGGCGTGGTGAGCGAGTGCCACCCGT 30230 29 100.0 32 ............................. AAGGACAAGCGAATTGTTTTCGCCGACGAGCT 30169 29 100.0 32 ............................. CGAAGCCCCCCGGCCCGGCACCAGCGTCCGCT 30108 29 96.6 32 A............................ CGGGCGACGAGTCGGGCGGCTCGCTCGGTCGG 30047 29 100.0 32 ............................. CTCGGATGCCATTCCCTGAACATGCACATGGT 29986 29 100.0 32 ............................. AGCGCCTCGGGCGAAGTCACCATCGGCGACAT 29925 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.8 32 GGGGTCATCCCCGCATGCGCGGGGAGCAG # Left flank : CAGGTCGGGTTCGCCCTGGCGGGCCGCACCATCACGCTCCTCCTGGACGGGCACCTCATGCATGCCATCGCCGACAACGCTCTGATGGGGACGTGGCCCTGCCCCGTTCCGGCCGACCGTCTGGGGCAGATCCACGGGGCCCGGACGGCGACGTCACCGTTGCCTCCTCCGCCTCTACCGACCGGTGCCATCCGGGCCCAGCGCAAGGTGCATGCAAGCGGCCGTTTCATGATCAATGGCCAGTTCATCAAGCTCGGCCCGCGGCATGCCGGGAAGATCGTCACCGTCGTCATCGAGGACACCCACTTCCGGATCCTGCACGGCGAAGACGAACTCGCCGTCAGGCCCCGCAAGAACCCCAGACCGATCACCAGGCTCTACGTCAAAGGCATGGGCACCCAGAGAGACCGTCAAGGATCTCCTGACGACAAACCGTCAAGGAAGTCCTGAGACCTCACACCGACACAGCCGCGCATCCACGCGACGGCCTCGCTCGCCTC # Right flank : GCTTCCTGAGCAGCCAGTTTAGGCAAGCCGGGACGCGTTCTGGAGTACTTTCACCGATCACGACCTTTCAGGTAAACCGTCGCATATCCGGCTCTCCGTCGGCTTATGAGAGGCGTTCCAGCGCGTCGACCAGCTGGCTTACAGACACAGCACCGGTCTCGGGGAGGCCGGCCTCCGACCATGCCCGCTGCGCGACGGCCATATCGCCCTCAGCAGCCGCCAGGACGTTCTGCTTCGCACTGTTCTCGTGGGCCGGGTCGGTATCGAGACCATTCCACGACCGGCGGCCGGTGTCGGGCGGCGTCCGTGCGTACTCGTTCGGCCTGCTCCAGCACGGCGATTCGCTCGCGGGTCTTCGCGAGGAGCACGGTAAGGAGGGTCTCCACGGTCCGCAGCCGGTCCAGGTCCGGGGGAGCCAGGCCGGCCCGCCACCGATATCCATGACTATCCCTGTACGTCCGTAGCGGAGGCTCGCTTGGGGGCCATCCGCGCTGCCACGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGGTCATCCCCGCATGCGCGGGGAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 34114-34821 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNZY01000046.1 Streptomyces katrae strain NRRL B-16271 contig46.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 34114 29 100.0 31 ............................. GTCCGCGCCTGCTTGACCAAGCGCGCGAGCT 34174 29 100.0 32 ............................. GTCTGGACTGCGATCGGGTCGGTGACGATCTC 34235 29 100.0 32 ............................. GTGCCGCCCGAGTCGTACACGCCGAGGTAGCA 34296 29 100.0 32 ............................. GCGTAGATGCGGCGGGCGAGGTACACGTGGCC 34357 29 96.6 32 ...............C............. GAGAACTACTGGCTGGAGTGCTCCACCGTGAT 34418 29 100.0 32 ............................. CTGCCCGTCACCCCCGATGGTGACGGTGACAG 34479 29 100.0 32 ............................. TGGGCGCTGCCCACGAACCCGAAAATCGGGCC 34540 29 100.0 32 ............................. ACCCGGTGCAGGGGCCGGTCGTGCGGCAAATC 34601 29 96.6 32 ....................C........ TGGTTGTCGGCGCCAGCCCCGTTGAGCGTGAA 34662 29 100.0 41 ............................. GCGACCAACCTGGCCCACGGCAAGGGCCTGATCGCCACACA 34732 29 100.0 32 ............................. GTCGCCCCGTACGGGGACGAGCGGATCGCCCT 34793 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 12 29 99.4 33 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : CTGTACGTCCACGCCACCGACGGAAGCACCACTGCCGCACCGGTCGTCGGGAGATGACGAACGTTCAGCCGAACGTGTCAACCATGTCCAGAGGACAAACGGTCAAGCATCTCCTGAGACCTCACACCGACACGGCTGCTCCCGCGCACGCGCGGATGACCCCTTCGGCCTGTACTGCCAGGTCAACGCCTACGAGCTGCTCCCTGCGCACGCGGGGATGACCCCACCGCGCTTTTGGCGCGATAGGGCCCAGGTTCTTCCTCGAGGACCCTTTGAACCCGGCAGAGCTGGCCCACCTCGAAGGTCAGACTGGTGTGTCGCTGCCCGGGGAGTACCGCCAGAACAGGCGACCGGACCAGAGCATGGTGAAGCCGGCCTCCGGGTCATCCCCGCGTGCGCGGATCGGATATGGGACGGTTGACGGTTTACCTGAAAGGTCGTGATCGGTGAAAGTACTCCAGAGCGCGTCCCGGCTTGCCTAAACTAGCTGCTCAGCAAGC # Right flank : CCTCCTGCGGATCAGCACCGCCGAGCACCTGGGCTCGCCGCGGGACGTGGACGCCTGCCACCGGCTATAGCGCGGAGGCGGTGGTGCTCTTCCCCTCGGCCCGCAGCATCGATAGCTCCGCACCCCGGGCGGCGACGAGGGCGGTCGGCAACGCATCGCGGCAGCTGCTGCTCCCGCTAGGCCACAGTTGGCGGTGCGGTCTCCTCACGCGCCCGTCATGCGCGACGGCGGGAGCACGGCACCCGCCCGCCTCCGGCGGAATTGACGGCCCAGCGTGCCCGGGCCGCCCCTCGCCCTCCTGCCGCTGCCGTCTTTTGGCACCCCGGACAAACCGCAGTCGGCAACGAGAGGGGGCTACGCGTGCCATGTGACGGTGGCCGGTCTTCGCCTGGGCCGTGCAAAGTTGGTCGTCTCTCTCGCAGCGTGCAAAAGTACGTTCGATCAGCGTTTGAGGGGATGTCGTCGCGCGGCCGTGGGCGTGTGACGGCGTGGTTTGGGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //