Array 1 1027718-1029149 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082954.1 Salmonella enterica subsp. arizonae strain S499 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1027718 29 100.0 32 ............................. AATGGCGCAGCTTTGGAATATTGGGCCAGCGT 1027779 29 100.0 32 ............................. CAAATCGTCTTGGCTACGTTCGTCTTAACTCG 1027840 29 100.0 32 ............................. GAGCGACGCCAATCACTAATGAAGGGGGCAAC 1027901 29 100.0 32 ............................. TAATAGGTAAATTGTGAATCCGACAACAGCAG 1027962 29 100.0 32 ............................. ACGATGAGGGCGCACAGGGTTGGTCAACGCTG 1028023 29 100.0 32 ............................. TGTTTCTCTTGATCTCAGGGGGAGGGGGAGAA 1028084 29 100.0 32 ............................. GGATACCAATCCTTGGTGTTGGCGCTATCTAT 1028145 29 100.0 32 ............................. ATCCTAACGCTAATGAGGTTGTATGGACCGAG 1028206 29 100.0 32 ............................. ATACATAACAGTTGCATGGAGGCAGACAAATA 1028267 29 100.0 32 ............................. TTGTAACCTGCGGCTATCAGTGCATCGTAATC 1028328 29 100.0 32 ............................. CGCGCCACGTGGCAACGTCATTAGCACAGAAG 1028389 29 100.0 32 ............................. CAGCCTTTACATCCGCTATCTGCGTCGCGCTA 1028450 29 100.0 32 ............................. CGGGGTCAGCGTCTGGTGGGAGATAAAAAATG 1028511 29 100.0 32 ............................. GGAGAAACACCCGCAGCACCACGGGCGATGCA 1028572 29 100.0 32 ............................. ATTACAAATAATGCGACTATGTATGCAGAAAA 1028633 29 100.0 32 ............................. GTGTCTGGAGATACCACCACGACGCATCGTTA 1028694 29 100.0 32 ............................. GCGCGTTGATAGGTATTGTTCTGGGTATTGGT 1028755 29 100.0 32 ............................. CCAGTGTAATTGTTGTCTGTGACATATAATCC 1028816 29 100.0 32 ............................. TTTACCGCCGCTCAGCTTCGTACCCTGGTAGA 1028877 29 100.0 32 ............................. GCTTACATTGAGATTCCTTTGTTTGTCGTGGG 1028938 29 100.0 32 ............................. ATGATTTTCTCCTCAATTACCCGCTATAATAC 1028999 29 96.6 32 .............T............... TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 1029060 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 1029121 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGATGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : ATTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //