Array 1 982483-980604 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017898.1 Sphingopyxis sp. FD7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 982482 36 100.0 30 .................................... AGCGCCCGGCCGATAGCCTCTGCCAGCGCA 982416 36 100.0 29 .................................... CATAAGCGGGCGTCGGAGAAGCTGCAGGA 982351 36 100.0 29 .................................... GGACCGGGGATTAGGCCACCGCGCATTCC 982286 36 100.0 30 .................................... TATGCGAACCAAAGGATTGACCTTGAAAAA 982220 36 100.0 29 .................................... TGCGCTTGCCGCCGACCTATGGCGTCGGC 982155 36 100.0 30 .................................... TCATCGAGTCTGTGTCCAACGTCGGTGATC 982089 36 100.0 30 .................................... GACCGCTGCACACGGTAACCCACCCCCTAT 982023 36 100.0 30 .................................... GCTGCCGACATCAAGTATTATCATGGCGGC 981957 36 100.0 30 .................................... AGGACGGCTCGTGCTGGGGCTACTACGGCG 981891 36 100.0 30 .................................... GGCGCATGGCGCGCGGCGATGCGTGGATCA 981825 36 100.0 29 .................................... CCAGTAATCGCGCCACCATTGAGCGTTGT 981760 36 100.0 30 .................................... TTACCGCCGCTTTTGACGTTGAAAACATAG 981694 36 100.0 30 .................................... AACTTGCGCTCGGCTTCGAAAATGCCGTGA 981628 36 100.0 30 .................................... GCGTGTTGGCCTCTACACTACGCTGCTACA 981562 36 100.0 30 .................................... ACGGCGCACGACATGCCGCCGGTCGATTGC 981496 36 100.0 30 .................................... GCATTCGGTCACGGCCTCGATCTGCGCGGC 981430 36 100.0 30 .................................... GAGGGCAGCGACAACAAACCCCAAGACGTC 981364 36 100.0 29 .................................... GAGACTGGGCGCGATGAGATTTTTTGCGG 981299 36 100.0 30 .................................... AGCTCATCGCATCGGCCGACCCGACGCTGG 981233 36 100.0 30 .................................... GCCGCTGATCCTGTGGACATTCAGGCGCAA 981167 36 100.0 30 .................................... AACGAACGGAATGATCCGGCGTTCGTTAAG 981101 36 100.0 30 .................................... GTCGAAATCGTCGAGCCAGCCGAACCGAAT 981035 36 100.0 30 .................................... AGACCCGCCGCCTTGCCTCCTCGCCGCTCG 980969 36 100.0 30 .................................... CAGGCGGAACGGTGCCCTGACTGCGATGGC 980903 36 100.0 30 .................................... TTAATAGCTAGCGCCGCTGGCGTGGCAGGT 980837 36 100.0 30 .................................... GATCTCATCGACTGGAAACGCGAGCGAGCA 980771 36 100.0 30 .................................... ACATTTCTAATTGCGTTACCAGTAATGTTA 980705 36 100.0 30 .................................... GAGGGGTGGGATCAGGTCAGCTGGCGCTTG 980639 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 100.0 30 GTCATAGCATTTCAGAAATCGCGGTCCAGCTGCAAC # Left flank : ACGCTGCGACCGGTAGCGCATGCTCTTCCGATCGGCGCCTGTGACACGGCACGCCCGCCGCTCGCTCATCCCATGGCAAGCCTGGAGATGGGCGACCGCTTCCCGCTGAACGGCGGGCGTCACCATTTTTTTGTGAGAAGATCCTTCAGCGCCGCATTGTCCAGCATCGAGTCCGCAAGCAACCGCTTCAGCTTCGCGTTCTCGTCCTCGAGCGAGCGTAGCCGCTTCGCCTCCGACACCTCAAGGCCGCCATACTTGGCCTTCCAGTTGTAGATCGTTGCTTCCGACACCCCGTGTCGCCGCGCCAGCTCGCCGGTCTTCGCGCCCGCCTCCGCTTCCTTCAACACCCCGATGATCTGCTCTTCCGAAAACCTCAAACGCTTCATCTGTCCGTCCTTCCTTCAAGACCGGACTCTAATCACTGTTGGAGGAAAATCAGGGGGTCACGTCAATCGCGGTCCAGCTGCAACTGATTTTTGTCATGCCGTATATTATTACGG # Right flank : TAACTGGTTCAGTGTGCTACGGCGGACTAGGTCATAGCATTCAGCGCAGGATCGCCGACGAGGTCAGTTCGGTGCCATTGTCGTTGACGACCATATGAGGCTTCCCCCGCAGGCCGATCAGCATCGTCAGTTCCCGGGCAACGGGGATGCCGGACACCCCAGGCGACGATAGCCGAACCGGCGGCGCTCGGTCGGCAGTTCGCGCAGGCGTTGCCGCAGAGCACCGTCATCCGGCCTCGTCGGCTCATATCTGATCACTCGGCGGCTCACGCCCACCAGGCTGCACGCCCGACGCTCGCTCAGCCCGTGATGGTCACGAGCATATGCGACGGCCTCCCGCTTGGCGCCGGGCGTCACCATTTTTTTGATGTCAGATCCTTCAGCACCGCATTGTCACGCATGGCCTCGGCCAGGCGCTTCTTCAGCTTCGCGTTCTTGTCCTCCAGCGCCCGAAGACGCCGCACCTCCGACACTCCACACCCCGAACTTGGCCTTATACT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATAGCATTTCAGAAATCGCGGTCCAGCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 984594-983832 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017898.1 Sphingopyxis sp. FD7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 984593 36 100.0 30 .................................... ATATTACTAGGGATAGTGCCAATCCGACTG 984527 36 100.0 30 .................................... GCAAGTTCGGCCTGCTCGACGGGCAGTGCG 984461 36 100.0 30 .................................... GGCGTGGCGGGAGCGATGGCGAAAGCCCTG 984395 36 100.0 30 .................................... GGAAGTCCCGCGTCCCCGGATGGTCCTTCC 984329 36 100.0 30 .................................... GATGCTATCGCCTGGGATAGCCCTGATGAC 984263 36 100.0 30 .................................... TGGGCCGTCCCGCTGGCACTATCGAGCGCT 984197 36 100.0 30 .................................... ATCTTTCATCCAGAACAGATCGCTGGCCAT 984131 36 100.0 30 .................................... CAGGGCACGCTCAATCCGACGCTATGGGGC 984065 36 100.0 30 .................................... GTGAAGCCTTGTTCTTTCAAGGCATCGGCT 983999 36 100.0 30 .................................... AAGCGCAGGTCTTCTACGGCACGCCGGAAG 983933 36 100.0 30 .................................... GGTGATCGGAACGCCCTCGTTGATCGCGCG 983867 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTCATAGCATTTCAGAAATCGCGGTCCAGCTGCAAC # Left flank : GCCCGAAGCTTCGAAGAACGCAGATCGGCACTGGCCCTGTTTGACCCACCCGATCCTCTCGATTGGGCCTCGATCGGGCAATCAGTTGCGATCGAAGCATGAACCTGAGCGGATACCGGCTGATGTGGATATTCGTTATGTTCGACCTGCCGGTGGACACCAAGGAACACGCACGCGAAGCGACGAAATTCCGGGAGTTTCTGCTTGATGAAGGCTTTGAAATGAGCCAGTTTTCAATCTATGCTCGGTTTTGCAATGGCAAAGAACATTATGAAACCTACCTGCGGCGAATCGAGGCTCACCTGCCCGAACGCGGAGAGATTCATGTGCTCAACTTTACCGACAAGCAGTACGAGAATATCATCCGGTTCTCGAGCCAACGTCGCCAGCGGCAACGAAAAAATCCCGATCAACTCGCCCTGTTTTGATGATTCGCTGCATTTTTGCAGTGACAGATGGGATCTTTTCCGGTTTCAGTTCAACCAGTTAAGAGCCCATCC # Right flank : TCCATCTCGACGATGGATTGTTGGGCGGGAGTGACGTGACCCCCTGGTTTCCACCAGCGGGGATTAGAGCCCAGCAGCTTTGTTGCGCATGAGCGCAGTGTAAGCAATGGCCTGTGCAGCGGAGCCCGAAGGGCGTAGCTGCACAGGCCATTGCTTATGCAGTTCGGCGGCGAACGCCGCCGGTGTCTCATATCCAAGGGCCGAGTGTGGCCGCGCCTGGTTGTAATCTTCGGCCCAGGCCGCGATCACTGTGCGGGCATGATCGAGGTCGAGGAACAGCGTCTCGTTCAGAAGCTCATCGCGCATCCGGCCATTGAAGCTCTCGACATAGCCGTTCTGCATCGGCTTGCCCGGCGCGATATAATGCCACTCGACCCCGACCTCACCGCACCATGCGAGCACCGCGTTCGATGTCAGCTCGGTCCCATTGTCGCTGACGATCATCCCCGGTCTGCCGCGCTCCTCGATCAGATCGCTGAGCTCGCGCACGACCCGGCGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATAGCATTTCAGAAATCGCGGTCCAGCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //