Array 1 16716-15052 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCIO01000080.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE114 HEIDELBERG_S8_trimmed_contig_81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 16715 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 16654 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 16593 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 16532 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 16465 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 16404 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 16343 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 16282 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 16221 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 16160 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 16099 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 16038 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 15977 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 15916 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 15855 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 15794 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 15733 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 15672 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 15611 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 15508 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 15447 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 15386 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 15325 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 15264 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 15203 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 15142 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 15081 29 96.6 0 A............................ | A [15054] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : G # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7418-6292 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCIO01000180.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE114 HEIDELBERG_S8_trimmed_contig_186, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7417 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 7356 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 7295 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 7234 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 7173 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 7112 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 7051 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 6990 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 6929 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 6868 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 6807 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6746 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6685 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6624 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6563 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6502 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6441 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6380 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6319 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //