Array 1 1-329 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWPF01000043.1 Klebsiella pneumoniae strain VRCO0293, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 60 29 100.0 32 ............................. GTCAGATCACGTCAACCACGCTTGATTTTACC 121 29 100.0 32 ............................. CTCACTAACGCCGTTGCCTGCGATAGCTGATG 182 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 243 29 100.0 32 ............................. TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 304 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 181999-179106 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWPF01000003.1 Klebsiella pneumoniae strain VRCO0293, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181998 29 100.0 32 ............................. GCGATCATGCCGTAGTCTTCGATCACGTAATC 181937 29 100.0 32 ............................. TTTGCCTTCCTGTCTGCAGAGGCGCGGACAGG 181876 29 100.0 32 ............................. CGTAGCTAAAATTAACTGCATTCGGCGCACCT 181815 29 100.0 32 ............................. CCAGCTCAATTTCCGCCTGTCCCGCCAGCGCC 181754 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 181693 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 181632 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 181571 29 100.0 32 ............................. ATTAAATTTTTCGGGTAAAGAGAAATTGCGAA 181510 29 100.0 32 ............................. CTGCGAGCTACCCTGAATTTCAGCGACAGGGG 181449 29 100.0 32 ............................. TAGTGCCATATATTATCCTCTGCGGTATGACT 181388 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 181327 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 181266 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 181205 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 181144 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTACAGGTAATACGT 181083 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181022 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 180961 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 180900 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 180839 29 100.0 32 ............................. GTTGTCAGTCAGGGAAAATCTATCCGCAGGGG 180778 29 96.6 32 .G........................... TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 180717 29 100.0 32 ............................. AACTGAATGTTCCAAATCCGGTTGGACGACCA 180656 29 100.0 32 ............................. TTCAGCAGCGCGCTCGTCCCCCTCCTGTCGGA 180595 29 100.0 32 ............................. CTCTACTACGATAACGGATCCCACGCGGGCTG 180534 29 100.0 32 ............................. GCTGCCAGCCCATTCCGTAATTGCCTGTTTCA 180473 29 100.0 32 ............................. GCGAATATAGGCATTAATGCTTTTAATAATAT 180412 29 100.0 32 ............................. CTCCGTCACCAGTTCTGTGCTATCCGGCACAA 180351 29 100.0 32 ............................. TCACGTTTGCAGAACTCGCGGAGGAAGAAGAA 180290 29 100.0 32 ............................. GATCCCCCGGAGGAGACTGATCAAACCACTCG 180229 29 96.6 32 ............................C CGCTGGTTAATGGGCTTCCCGGAAGGGTGGGC 180168 29 100.0 32 ............................. TCTATCGCAACCACCGCTGAGGCGCTGATTGA 180107 29 100.0 32 ............................. CCGCTCCACGGTGAGCGGCTGTTCAATGTAGT 180046 29 100.0 32 ............................. CATCACGCGCTGGCCAATGTGTTAAACCAAAT 179985 29 100.0 32 ............................. GGCATCATTCTCTTCGCTACTCCCGCCGATCA 179924 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 179863 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 179802 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 179741 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 179680 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 179619 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 179558 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 179497 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 179436 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 179375 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 179314 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 179253 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 179192 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 179134 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCACGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //