Array 1 88495-89928 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFJS01000001.1 Serratia marcescens strain AH0650_Sm1 scf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88495 29 100.0 32 ............................. CCGCGAGCTAATCAGAAAGCAAAAAGAACTAA 88556 29 100.0 32 ............................. CTCTGCACGGCCGCGCGCCAGCTGGATCGAGA 88617 29 100.0 32 ............................. CGAATAGAAACCGCCAATAGCCAGATCGCTGG 88678 29 100.0 32 ............................. CCGATCGCGCCGGCAACGATCTGGCCACACAG 88739 29 100.0 32 ............................. CCAATGACACAAATAAAACAAACCTGGCCGGG 88800 29 96.6 33 ............................A GAGGCGTGTTTGCTCATAGGTAGGGCGGTTAAC 88862 29 100.0 32 ............................. ATTTATAGCGATGATCCGAATGCCTACGGGCT 88923 29 100.0 32 ............................. CTGGCCCACGAGTAGCAATATCCAGATCATCA 88984 29 100.0 32 ............................. GAGGTTATTCACCTTCGTGATTTCCTTAATGT 89045 29 96.6 32 ............................T TACCTGCGAGATCGTCGGCACTGGCAAAAATC 89106 29 100.0 32 ............................. CGATCTGCGGTTGCGGCGGAGCCGGCTCTATG 89167 29 100.0 32 ............................. TGATCCAACTGCTGGCCGCGTACATCAAAGAC 89228 29 100.0 32 ............................. TTATGAGTGAAACAAAATCATACGATTACTTG 89289 29 100.0 33 ............................. GGCTGGGAATCCGTCGGCCCGCGCGATATTGCC 89351 29 100.0 32 ............................. GCCAGAACTTAATCTGGCCTCATTTTAGTATT 89412 29 100.0 32 ............................. CCCTGGCATAACGGGAGCCAGGTCGTAATAAT 89473 29 100.0 32 ............................. ATGCAGCTTGGGAGTTAGCACCAGAATGCCTA 89534 29 100.0 32 ............................. GATGTTTTCACATCTGTTGATATGGTTTTCCA 89595 29 100.0 32 ............................. CCATTCCGGTAACTCTGCTGTCATCGGGTCGA 89656 29 100.0 32 ............................. CAGTGTTAAACCAGTCCCGTAATTGCTGATTT 89717 29 100.0 32 ............................. CCGGCATTCAGCGTAAAATCGCGGTCGGTGAT 89778 29 100.0 32 ............................. CCAGTCGACATAATCTCCATCACTGTTTTTCA 89839 29 100.0 32 ............................. GCCAAAGATGCCGAGGGCATGAAACGTAAAGA 89900 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.6 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : AGCTGGTGACCGAGTGCCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTCATCACGACGCCGGTCTTCTACCTGTCCGGCACCATCTGGCCGCTGCAGTCGATGCCGGCCTGGGTGCGCGCCATCTCGTACAGCATTCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGGGCTGTCGCTGAATGAAGTGTGGGGCGACGTGATGATGATGCTGATACTCGGCGTGGTCTACACCCTGCTGGGCTTCGGCGTCGGCTTCTTACGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAAACGGCGGGTGTAGTGGATGTATGTTATTGTTTTAAAATAAGAACCTGGTGGTTTGGCTTTATTGTAATGAATGATTTTTTTATTTCATAAATTTCAAATGGTTATATAGTCTTCCGGATAATTAAATCGCGGTGAAATTTTGTAATGTTTAAAAGTATATTTAATTCAATTAGATATATTGAGA # Right flank : GCATGTTCGCGATTTCTGGTTGCGGGGAATGGCGAAAGGTTCGTTCGGAACGGCGTGCATTGCCGCAAACAATGGGAATGCCGGAGTACCCGGATTGTCAGGTGCCACGGGATCTCACCCGAGAGGGGGGCTGCGCGGGCTTGAGAAGCCCTGCATCAGTACATCTATGAAGTGGGGGCTTGAGGATTATTAAAGATATGGTATTGTGTAATAACCGTGATAATCAGCAGGAAGTCAATCCATGAACGTCGTTCACGACCATCCAGGGGTCTCTACTCTTGTTGGAACCCCAAAAGAAATACAGGACAAGCTCCGGAAGTCGCATGCCGACAAGGTGATGGTGCTCACTTTCGAGCACATGAATGCCCATGTGCTGAAGACCTTGGCCGAGAACATGTCAAACGTTGCCTCGTCGATGTTCGAAGTGCTGCTGACACGGCAGGATCGCGAAGTCGTAGAGCTTCTGGCTGACGCGCTCGTTCCGCGAAAGCCGGCTTCAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 103006-104378 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFJS01000001.1 Serratia marcescens strain AH0650_Sm1 scf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 103006 29 100.0 32 ............................. TAATCAAAAATCCCTCCTTTCAGCGCCTGATG 103067 29 100.0 32 ............................. CGCAATGTCACTTTCCCCCGCGCAGCGCCACA 103128 29 100.0 32 ............................. TCGCCGCCGCTCTTCTTGTCCTTGCCGGTCAG 103189 29 100.0 32 ............................. GGTTCGATCGCTGGTCGGACGCCGATAGGATG 103250 29 100.0 32 ............................. TAGATGGAGGGTTGGGGGCGTTATTTACGTTG 103311 29 100.0 32 ............................. ATGTACCATCGGAAACATAACTGTATGTAATT 103372 29 100.0 32 ............................. TCGGGCGCATATCGCGCACCCAGTCATCACAT 103433 29 100.0 32 ............................. AAATATCAAGACCGTTCCCCGTATTATATGCA 103494 29 100.0 32 ............................. CATAATGCAATAAAAACGTGTTTGCAACGATT 103555 29 96.6 32 ............T................ CAACGAATGCCACTATCACGGGAGAATTGAGC 103616 29 96.6 32 ............T................ TTTGGCCGCTGGCAGTGGTTCATTCTGTCGGT 103677 29 100.0 32 ............................. TTATGCCCCTCTCATACTTATGTTATTTTCAG 103738 29 100.0 32 ............................. GCGTATGCACCAACGCCAAGGAGCGAAGGGGC 103799 29 100.0 32 ............................. TCAGCGCGTACGCCGTAATAGCCCTCCTGATC 103860 29 100.0 33 ............................. TAAGCCGGGTTAATGCGGATGCCGTGGCGTTGC 103922 29 100.0 32 ............................. CCGATCGTCTGTCATTCCTGCCGTATCTGTTC 103983 29 100.0 32 ............................. CACTAATTAAGATACCACTCCACGAAAACCTT 104044 29 100.0 32 ............................. TCCTGGCCGAAGAGTTCAGCGCCGCCAAGGCA 104105 29 96.6 32 ............T................ GTCGTAGACAAATACCGGCGTCTGATCGTCCT 104166 29 100.0 32 ............................. GTGCGCGACCGTCGGCGCTTCCGCTTCAGCCC 104227 29 96.6 32 ................T............ GGTAACTGGGCCATCATTTGGGCGCTGTTCAT 104288 29 96.6 32 .............T............... CCTAAAAAGAGAACGGGGTGACGCCATGATGA 104349 29 79.3 0 ...............A....C....TGAC | T [104366] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGATTGAGGAGGTTCTGGCCGCGGGGGGAATCGAACTCCCTAAACCTTTTGAAGATGCGCAGCCCCCTGCGATTCCTGAACCTGTTTCGTTAGGTGATGCGGGCCACAGGAGTCGGAACTGATGGGAATGCTGGTTGTCGTGACGGAAAACATTCCTCCACGGCTGCGAGGCCGGTTGGCTGTGTGGCTATTGGAGGTGCGGGCCGGGGTCTATGTCGGTAATACCTCGCGTAAAGTCCGTGAAATGATCTGGCATCAGGTTACCGCCTTAGCGGGGGAAGGTAATGCCGTTATGGCTTGGGCGATGAATAACGAGTCCGGTTTTGATTTTCAAACATGGGGAGAAAACCGGCGTGAACCGGTAGATCTCGATGGGCTAAGGTTGGTCTCTTTCCTCCCTATTGAAAATCAGTAAGTTATCGATCTTTAAAAACATGGAAAAGTTGGTGGAATTTTAGAGTCTTAAAAAGTTCTATTATAACAAGCAGTTATGCCTAGA # Right flank : CTTTTAGTGAACGGTATGTCAGAACAATCACTCATCAGTGGCTAAATACCGGCAGTACTTAAAAATAAAACGCTCTCATATCACCCCACCAACTCCAACCCCGCCACGCGGCGCCAGTAGCCGTTGCAGTCGGCGTGGTCGGTCAAGGCCAGCGGCTGCTCGCCGCGCTCGTTGGCGCGGAAGGCGTCGATCTGTGCCAGCGTCTCGGCGCCCTGCGGCGACAGTCGCAGGATGTCCACCAGCCCCTGCATGCTTGGCAGCTCGTTGCCGAGGTTGTAGCAGTAACCGCTCATGGTCTGGATGCCGTTGAGTACGAACACCTGCTGCTGTTCCTGGGAGCGCATCATGCGGCCCTGCGGATACTTGATGCAGCAGGTTTCGCACTCGTCCTTGCCGCGGTTTTCCGAGCGGGCGGTGAAGCAGCGCGCCGAATAGGCCAGCGGCAGATGGCCGTAGCTCAGCACCTCCACCTCGAAGTCGTGGCGGAAGCCCAGCTCGTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 107782-109582 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFJS01000001.1 Serratia marcescens strain AH0650_Sm1 scf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 107782 29 100.0 32 ............................. CCTGCCCCTGAACGTCATTCATTAACCAGGAT 107843 29 100.0 32 ............................. AGATTGACATCGGAATCGGCCAGCCTCGAATG 107904 29 100.0 32 ............................. GTTTTGAGGTCGCTTATTCGCCTAGCATTGCT 107965 29 100.0 32 ............................. ACGGGCTATATTTGCTAACAGGCATCGCGCGC 108026 29 100.0 32 ............................. ATATCTCCGGGTTGAAACGCGACTATGCCGGC 108087 29 100.0 32 ............................. AAAAGCTGGGACAACCAAGCAGGACTCCTGCG 108148 29 100.0 32 ............................. TTCTCAGAGCTATCATTTTCAGCCGGCAAGTA 108209 29 100.0 32 ............................. TTCACCGAGCTGTTCGAGGACAACATGATCGA 108270 29 100.0 33 ............................. CCATCAGCGAAACCACCGGGTTCCGCCCAACGC 108332 29 100.0 32 ............................. TTCTCAGAGCTATCATTTTCAGCCGGCAAGTA 108393 29 100.0 32 ............................. CCCTGCACCACTGTCATTGCTGTCCAGCGGCA 108454 29 100.0 32 ............................. CCATGAGCAAGACCGGACGCAATGGTTTCACC 108515 29 100.0 32 ............................. CACGCTCAACGGGCTGGCCGATGGCACGCTAA 108576 29 100.0 32 ............................. CCGATCACCTGGACTACTCAGTGCTGGAAGAA 108637 29 100.0 33 ............................. CGTAAAGCGCATAACTACCATGCTGTATCCGCC 108699 29 100.0 32 ............................. GCCTGGTAGTTCATGCGGCCATCTCTCGTGGT 108760 29 100.0 32 ............................. GCGATCGGCAACGAGTGGAATTATCTGCAGGG 108821 29 100.0 33 ............................. CGTTGCCGCCCGGAGTTGCGCCAGTGTTTTGGC 108883 29 100.0 32 ............................. CAGATGCGCATGACCAAATCCTTCCAGGAAGT 108944 29 100.0 32 ............................. TCTGCTTATCAGCCTACACTTGATATATTAAG 109005 29 100.0 32 ............................. GTCACGGATAACAGCCGTCATGTCGGTGTTGT 109066 29 96.6 32 ...........A................. CGCACCTGGACGCTATCGCCAAGCTCAATGTC 109127 29 100.0 32 ............................. TTCCTGCGCCATCTGTTCTTCTTCTGGCTCCA 109188 29 100.0 32 ............................. ATACGCGCCGAGGCATTATTTTGCACTTTGGG 109249 29 100.0 32 ............................. GTGGAAATTTACCTGGTGATCCGTACCTACGA 109310 29 100.0 32 ............................. TATGTTTCCGCAATTTATCAGCGCCTATTTGC 109371 29 100.0 32 ............................. AAATGGAGCATCACGGTCGGCCTGGTGCTCAC 109432 29 96.6 32 .............C............... CCGATAATGATGCGGTCGAGCGCCTGACGTTT 109493 29 89.7 32 ............TC.....A......... CAGCACGTCACCCGACGAGCTGGAGCAGGCGC 109554 29 69.0 0 ........T.T.TA.A......GG...AA | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : TACGCCGCGTTCAGCCCGGTAGACGTGGCCGGCGAAGACCGCCAATGGGTGGCGCTGGCGCCGCTGGCGGTAGACGAAAGCCTGCGCCGCCAGGGGCTGGCTGAAAAGCTGGTGTACGAAGGCCTGGATTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCGGCCTACTACGGCCGCTTCGGCTTTAAACCGGCCGCCACCTATGGCCTGAACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTCTAACTTGTTGATAATTAGTTTTAATTTGGTGGGAAAGGATTTCACCAAAGTGCTTTTTAAAATTTACTTATAAATCAAATGGTTGTATTTTCACGTAAGACGAGAATATTTGGTGGAATTTGAGGTCTTTAAAAATTCATTTTAATTCAACCATATATTCTAAG # Right flank : ATTGAGTGCTCGCAATCACATAGGCAGCATTTGAAATGCAGGGGGAAAAATCACGTAATGAAACCTATTAACCAGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAATGTCAGTTCCCCTTTACCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGGTGCTGTGCCAGTCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGTAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGAGCCTTACCGCTTTACCCTTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATACCGTACAGCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //