Array 1 57-752 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDUJ01000021.1 Siminovitchia fortis strain DE0494 NODE_21_length_54405_cov_179.574675, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 57 36 86.1 30 CCAGG............................... ATGCTAGTTTTTCGTTCATCTCTTATCATC 123 36 100.0 30 .................................... TATACTCATTTACAAATTCAATACCCATAC 189 36 100.0 30 .................................... GTCAGTTCGTTTGTATTCGTAATATTAATC 255 36 100.0 30 .................................... CTAAGACGAGCGCTAACGTTAAATCTCCGA 321 36 100.0 30 .................................... ACGTAATTATCAATTTCCCGGAACGTCTGG 387 36 100.0 30 .................................... TAGAGCTTGGGTTTTACCGCATGATGAAGT 453 36 100.0 30 .................................... GGCATGAAGATATTCTCGTATTCTACAAAA 519 36 100.0 30 .................................... TTGGTTGTTTGATTTTAATTCGTTAATAAT 585 36 100.0 30 .................................... CTTTCCCCGTCCATGTTTTCTTCGGTTTTC 651 36 100.0 30 .................................... GACTGAATCACATCCCCCAGAGGCATTCCA 717 36 86.1 0 ..T..........C..G......A......A..... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 97.5 30 ATCATATCACATCAAGATTTACAGGGGAATTATGGC # Left flank : TATACCAAAGGCTGGAGCCCTTTTTGTATTTAATAACTAGATTTTACTTTCGTAATC # Right flank : CGATAACTGTCAATTGGAGTTTCATCTCTTTTTTCTTGGAGGTAAGCTTGCCCCTTCAGTAACTGCTAAAACTGTCAAAAAAACCGTTCCGCCAGCGCACATTTTAATGATAAAATGGAACTAAATACTGGACCATGAGAAAGGGATAATATGGAAAAAGGATTAAAGTACAGCTCTACCATCAAGTCACGACCCTTCTTATACAAGGAGACCAAAATGCTGGCAGAACTGCATTTGAAGGGGTTGAATGAACTCGAATTGAAAGAGAAAGTTATCAGCCAAAATATCTTTCAAGTCAAAACTGAAACCCGCAAAAGAGAAATTGCTTCAGCCATAAAGGCACGTTTAAAAGTGCTGGATGATTACCTCATTAGGAAGCTTTTAACTACTGACATACATACAAGTAAATTGATCGTACTGTACGCTATCCTTAAAACGGACAGGCTGTTTTATGAATTTATGTATGAGGTTTTCAGTGAGAAAATTTCCGGGCGCGATTT # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCATATCACATCAAGATTTACAGGGGAATTATGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 102-3237 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDUJ01000073.1 Siminovitchia fortis strain DE0494 NODE_73_length_17343_cov_172.682176, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 102 36 100.0 30 .................................... CTGCCGACAATGCTACGGATACCTGCGATA 168 36 100.0 30 .................................... CGGCTTCATGCCCGTTTGCTCGTAATAGGA 234 36 100.0 30 .................................... GGAGGCCCTTTACAATGAAAAAACTACTCT 300 36 100.0 30 .................................... TAGGGAACTTGAGCAATACGAGGCGGAACT 366 36 100.0 30 .................................... ACGATTTCTTTATCGGATTCCCACGGCGGA 432 36 100.0 30 .................................... CATTAATCTTTGCTTTTCTTCCGGTGTTTT 498 36 100.0 30 .................................... AATGCTAGTTATGTAACAACAGGTTTGTTA 564 36 100.0 30 .................................... TTAGGCGGGAAGTTAGCGAGGTCATTAGAG 630 36 100.0 30 .................................... GATAGCCTTTCTCATATTCGTGTTTTTCTG 696 36 100.0 30 .................................... CGTAACAAAACACGCTTCTGTTACATTCGA 762 36 100.0 30 .................................... AGCCGAAAGCCGAATAAGGCTTTTTTATTT 828 36 100.0 30 .................................... TGTAATGAGGCCGATCAGGCATCACTTCCT 894 36 100.0 29 .................................... TAAAGGTTCGAGGAAACATACTCGCCAAT 959 36 100.0 30 .................................... CGGTTTTCAAACGGTACACCGGTGTACCAA 1025 36 100.0 30 .................................... CCTCTTGCGAATGTTCATCGGTCCAGTCCT 1091 36 100.0 30 .................................... GCAATTATGCTTAACACGGTTAAATTGCGC 1157 36 100.0 30 .................................... AAAAAATCCTTCGCAAGATGCTAGAGCTTT 1223 36 100.0 30 .................................... GGAAAGAGGATCAGAAGGACAAAAACTGTC 1289 36 100.0 30 .................................... TACTTTAATCGACCAAATCGCGCAGGTAAT 1355 36 100.0 30 .................................... CTTTCGTGGGGTTACAATCTCGCAGAATTA 1421 36 100.0 30 .................................... CGAAGCTAAGACGGTTAGGTGCGCTCATGT 1487 36 100.0 30 .................................... TGGCACGATGTCACATATCACACGATAGAA 1553 36 100.0 30 .................................... ATCATGTTGTATCGTTCTCCATCCGAAACC 1619 36 100.0 30 .................................... GTATAACTCGTTAACTCTTTCGTTGCAATA 1685 36 100.0 30 .................................... AATCAGTCGGAACAAACATCGTAAAAGATG 1751 36 100.0 30 .................................... CTCCTTTAGTTCCTGGAGCATAAAGGTAGG 1817 36 100.0 30 .................................... GCGCGCTTTAAAGAATACCGCCCCGACTAA 1883 36 100.0 30 .................................... CCTCCTTCGGGAAATAGTCCCTTCACCCCT 1949 36 100.0 30 .................................... TAATACGAAGGTGGAAGCGAAAGGATTAGG 2015 36 100.0 30 .................................... ATGCTGGATGAATTCGTGATCACGAAAAAC 2081 36 100.0 30 .................................... AATGTAAAAGGCATCTATTTAACGACTGGG 2147 36 100.0 30 .................................... CCGCTTTTGACACGTGTCGTCCAACCATAA 2213 36 100.0 30 .................................... GGATATTCGATGAAATCCATGAGTACAAGG 2279 36 100.0 30 .................................... TGCGGATTGGCTGAATGGTCTATCATGGAT 2345 36 100.0 30 .................................... AGGCGGATTGGAATATTCCTATTATCGAGT 2411 36 100.0 30 .................................... AATTGCAGGTGGGAAAGCTGGATTGACAGC 2477 36 100.0 30 .................................... ACAAGGGACAGGGAATGGTTTTATGAGGTG 2543 36 100.0 30 .................................... CCAATCCCACAAGGTGCGCCTGCCCTCGTT 2609 36 100.0 30 .................................... TGCAAGATAATCCATATCATAATTTTTTGC 2675 36 100.0 30 .................................... GAAAAAGAAAGTGGATCCACGTGAAGCTGG 2741 36 100.0 30 .................................... GGAACTTTCGGATTGAAGGTAAACCAGCGG 2807 36 100.0 30 .................................... GAAAATAGAATATGGGTATAAACTTTTTAC 2873 36 100.0 30 .................................... AAGAAGAGAAAGAGATTGTCCTACCCAGTG 2939 36 100.0 30 .................................... TTGAGAGCATCCAGGGAGATGATCTTGAAA 3005 36 100.0 30 .................................... TCCAGCAGTGGTATTAAAACAGCGTGGACA 3071 36 100.0 30 .................................... AGAGGATCCGAAGTTCCTATTAGGAAACTG 3137 36 100.0 29 .................................... TTGGTTGCAACGATGTAAACAAAAAGAGG 3202 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 48 36 100.0 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : TTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAGTGATATGATTAATGCATCCACAATTGCGCTTGGTGATTAG # Right flank : TACATGGCCGCAAAACCCTTGATTCCTCCCCGTTTCAGGGGTTTTGTATTTCCAAAAAAGAAGGATTTATCCCTGGGATTTATCCGCTTTGTTTTATTTTTTATAGAAATAACTGTAAAAAAAATACCTGCAAAATAAATTGCAAGTACTCTTTAAAAGAAATCTACTTTTTTAACACCGAGTTCTTCTTCTGCTGTCGTTGTACCCAATAAAATCTCCATATTGGCAAATTGTTTCTCCGTTATTTTCATTGCTCGGATGGCCCCATTAACAGGGGGGAGATTCTCCTGCAATCTCTTCATATGTTTACGGACCGCATCCTCCCCATTGCAAATTCTTGTGTATACTGAATATTGAAGCATTGTATATCCGTCATTCAATAAAAACTTACGGAAACGAGAGTAGGCTTTTCTTTCCTTCGGAAGTACTACCGGCAAATCAAAGAAAACGATAATCCTCATGTATCTACTCATATGTATGTACGTTTAAATTGGTTAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 14525-13156 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDUJ01000080.1 Siminovitchia fortis strain DE0494 NODE_80_length_14618_cov_187.228993, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 14524 32 100.0 34 ................................ CGACAGCTTCCGTAACGATTACCGTGTTTTTGAG 14458 32 100.0 33 ................................ TCGACTTGGAGGCGGCGGCTGGCTTCGAATCAA 14393 32 100.0 34 ................................ ACCTGTGACGGTGTTACGCAAGACTTCGATTTGC 14327 32 100.0 36 ................................ TTCCTTCGTTTCTTCCGTTTTTAACGACTCGTCAGT 14259 32 100.0 33 ................................ TACTCGAGCTACTAACGCATTCCACTGTGCTTC 14194 32 100.0 35 ................................ TGCTTGCCGTAGCCTATTCCGTATTTCGACTGCGT 14127 32 100.0 35 ................................ GTCTCGCAAAAGATATATCCGGAAACAAATATGGC 14060 32 100.0 36 ................................ GCTCTACCTATCGACGACCCGAAGAACGCGCATTGT 13992 32 100.0 35 ................................ CGTCTCATACACATAGTGTCAGCATCCCGTCGCAC 13925 32 100.0 35 ................................ TCCGGAAATGCTAACGTATATTCGGACGAGCACCT 13858 32 100.0 34 ................................ CCTCCAGTTCAATGTATTTGATTATGGTCATGCT 13792 32 100.0 34 ................................ AGAAAAATCCCGTTGACCGTATCTTTCGATTGCG 13726 32 100.0 35 ................................ CAGTTCTTCGGCTCCCACTTCATCGAGAATAACCC 13659 32 100.0 35 ................................ ATGATAATTACATCTTGGCTGGCGGCTCAATAGCA 13592 32 100.0 35 ................................ CCAATGGCGGCGGATGAGGTGATCATGGGAATCGG 13525 32 100.0 36 ................................ TTCAATCGACAGGTGCATGTCTTTCCACAGTTTCAT 13457 32 100.0 35 ................................ ACGGAAATCCTGCTTTGCTTTTTCACTCAAATCCC 13390 32 100.0 38 ................................ CAGAATATGAAAAGGCTACTAGAAAAATTTGGGTAATC 13320 32 93.8 35 ..........A......A.............. ATCTGAACGTAGTGGGATATAAAGGCGTGTTTGAC 13253 32 87.5 34 ..........C.A......T.......A.... GGTGTAAAGCCGGAGGTCATCGACGGTGCTTTTT 13187 32 75.0 0 .A....................TA...TTTTA | ========== ====== ====== ====== ================================ ====================================== ================== 21 32 97.9 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : ATTTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAACAGTCGGTCCGTACACAAAGTTTCCTAGC # Right flank : ATCAGTTTTTTTCTAAAATGAATCTTTTCCTCCCCTCACCCAGTATATATGTTTAGAATAATTTTTAAGGGGTGGCTGTAATGGGTATTTTATCAAGGTTTAAAGATATTATGTCGAGCAATATCAATGCATTATTGGACAAGGCGGAGAATCCGGAGAAAATGATCGATCAGTATATGAGAAACCTGAACAGTGATTTGGGCAAGGTGAAAGCTGAAACTGCTTCGGTTATGGCGGAGGAACAGCGGTCAAAACGGGCGCTCAATGAATGTTCGACAGAGATTGAAAAGATGCAGAATTACGCGGTCAAAGCCTTGGAAGCAGGAAATGATGATGATGCACGGAAGTTTTTAGAGAAGAAGGCCTCCCTGGCCGAAAAAGAAGCGGAATTGCAGCAGGCCTATAGTTTGGCAGCTTCCAATGCGGTCCGGATGAGGGAGATGCATGACAAGCTTGTTTCTGATATCGGCGAGCTGGAGGCACGCAGAACGATGATCAAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2575-74 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDUJ01000097.1 Siminovitchia fortis strain DE0494 NODE_97_length_8727_cov_188.765235, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 2574 32 100.0 33 ................................ TTTTAATATTTCAACCTTAGTTTCAGTATCCCC 2509 32 100.0 35 ................................ ATTTCATAGAAACTCATACCCGTTGAAGTTATACC 2442 32 100.0 35 ................................ ATGTTAGCGACTTCAGACAACCTACAACCGGTTGA 2375 32 100.0 35 ................................ ACCATCTTGATCACCTCCTCCTGTGTGCAGGAATC 2308 32 100.0 35 ................................ TTGTCTACACCGAGTTTGCCTAGCACCCAGTTAAC 2241 32 100.0 35 ................................ TCAAACTCCTGCTCCATGCCTTCCAGGTCCTTGAT 2174 32 100.0 36 ................................ ACCTTTGAACTCGTTACCTTTTCTTGAACCCTGACC 2106 32 100.0 39 ................................ TTTCTCAAGGACGATCCAATAGGCGCATCCATAATGCCA 2035 32 100.0 36 ................................ ATTAGCAATATATTTTGGCATGATTTTGCCCTCCTT 1967 32 100.0 35 ................................ TACTACTGTCATAACCGCGCCGAACCCCGAAATAA 1900 32 100.0 36 ................................ CTCGTCAGTAAAACGTATTGCGAATACAACTTTATC 1832 32 100.0 34 ................................ ACAAAAATTCACGCAGATCTTATGGAGTACAGCC 1766 32 100.0 34 ................................ AAAATATTGACGAGATGCTTACTTCGAACGGACT 1700 32 100.0 35 ................................ ACCGACACGCTCGCGAAAATTTGGCAGACGGTACG 1633 32 100.0 34 ................................ CTCGCCGAGTGGTCGGTGCCGAAAGTAACCTATC 1567 32 100.0 34 ................................ TTCTAATTCGATAGTAGAGCCGATGGGGTTACGA 1501 32 100.0 35 ................................ AACTCGGCAATCGGGAAGGCAATAAGCCTCCGCAG 1434 32 100.0 34 ................................ TTCGTAATCCCCGTCGTGGAATTTATCGATTGCT 1368 32 100.0 33 ................................ CGTTACATATCGGCGCGAGCTTTCATTCCAAGC 1303 32 100.0 35 ................................ TATCCTTGAAATCTACGAGCCCTACAGAAATATGT 1236 32 100.0 34 ................................ CAAGAAGACGGTGATCCTGTACTTAAGTTTTTAC 1170 32 100.0 34 ................................ ATACTTGAGTTTTCATTGATGGACTTAAGGTAGT 1104 32 100.0 36 ................................ TATACGAGATTGGGCGTGATTTTCGAGAGTGGTTAG 1036 32 100.0 35 ................................ AAGGATGAAATCTACAACTAGAAAGGGGTAAAAGC 969 32 100.0 36 ................................ CTGGTGTAGTGTAATTTCGAAAAACAGCCCTACCAT 901 32 100.0 35 ................................ TTTGATTTTCTTGTTGTCATCTTGCAGTTGCTGAA 834 32 100.0 34 ................................ TCTGACGTAGAGCCCCACCGTCATAAGCCAAACC 768 32 100.0 36 ................................ CAAACGTTACTATTTCGTCGCCCCACAACACGTCCT 700 32 100.0 34 ................................ CTTCCGGCTCATATTCGTAAACCGCTCCGATAAG 634 32 100.0 33 ................................ GCTAATCCTTCGCCAGTCCAGCGTCCGATTTGA 569 32 100.0 34 ................................ GTTAGAACACTCAATCTATTCAGCCCTTTTAATT 503 32 100.0 34 ................................ AACCATCATTATTTGGTTAAAGAACTCACTCCCG 437 32 100.0 34 ................................ TTCGGAAAACTGGAACAACGCCAGTCCGTCGGTT 371 32 100.0 35 ................................ AATTTCGATGCGTCGAGGCTTTCAAACGGAATCAT 304 32 100.0 35 ................................ CTTTTCGACATCTACCAAAGAGTCCTCAACTTCGA 237 32 100.0 34 ................................ ATAGCGCCGTGTATTGCGTGTGACTTCGCGCTTG 171 32 100.0 34 ................................ ACGTACCGATAATTTAAGTCCTCTGTTAGCTTTT 105 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 38 32 100.0 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : TGAATATCCACCATTTTTTTGGAAGTAGGTGAAAGAGTGCTTGTGTTAATAACATATGACGTCAGTACCACTACTCCGGAAGGTAGAAAAAGACTTAGGAAAGTCTCCAAGAAGTGTTTAGATTATGGACAAAGGGTTCAGAATTCCGTATTTGAATGTGTTTTGGATTCTACGCAACTTAAACAATTGAAATATCAATTAGAGGAAATTATTGATAAAGAAACCGATAGCTTAAGATTTTATAACTTGGGGAAAAACTATAAAGGCAAGGTAGATCATATAGGAGCGAAGGAATCTTACGATATAGAAGGAACACTTATTATTTAATTATGGTGCGAATATACAGCTCTCATACTTTTTCGTGGGGATTCGCACCCGAAATATCTTGGATTTGATAACGAATTTCCAGATAACTTCAAATGTATTCCTTTTTATGGGAATAAATAGCGAGTTTATGTGATTATTACCCTTTTTTTGGATAAAAACTCACTGATTTCGCT # Right flank : TTCGACAGTCGTGTAAAGAATCACTTTGTTCCGTCAAAAACAGGCCTTCTTTATTCAAATTCCTTCAGCGTGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 104-931 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDUJ01000152.1 Siminovitchia fortis strain DE0494 NODE_152_length_991_cov_179.243534, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 104 36 100.0 30 .................................... AGCACGTTACAACAGACTTCAAAAAGTTTT 170 36 100.0 30 .................................... CTGCTATTTCATCATCGGTAACGCGCTTTT 236 36 100.0 30 .................................... AGTCATTAGTACGCAAATATACGGTAAAAG 302 36 100.0 30 .................................... CGGATTCGCTTCTCCTACGATGTTCTTAGA 368 36 100.0 30 .................................... CTTTCACCTTCCAAACCTACATTAGTAGAC 434 36 100.0 30 .................................... CAGCGGTTAAACTGCCCCTTTATAAATGCT 500 36 100.0 30 .................................... TGCAGGTTTTTAGCGGCCTTTTCACTGGCG 566 36 100.0 30 .................................... CATCTTGCCCCAGAACATCAGTTGCACATA 632 36 100.0 30 .................................... GCGACTTGAATCCGGTCGTTACGGTAGACC 698 36 100.0 30 .................................... GTGATTACCTCGTTGGATAAGCGCATTATA 764 36 100.0 30 .................................... TGATACTGTGTTAGGTGAGGTGGCTGTCGT 830 36 100.0 30 .................................... ACTGACTTTGTTGGGGTAGTTAATAAGACT 896 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : ATCACGCTGAAGGAATTTGAATAAAGAAGGCCCTTTTTTGACGGAACAAAGTGATTCTTTACAGTGATATGATAACGAAGGTAACATTTCAACAGTGACGCAAG # Right flank : AAAGAATCACTTTGTTCCGTCAAAAATAGGCCTTCTTTATTCAAATTCCTCCGGCGTGAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 104-602 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDUJ01000165.1 Siminovitchia fortis strain DE0494 NODE_165_length_661_cov_167.842809, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 104 36 100.0 30 .................................... GAAAAGTTATATGAGGAATTTAAAAAAGAG 170 36 100.0 30 .................................... CATGCTTTGCGGGATTGATGCGGCAACGCT 236 36 100.0 30 .................................... TCTGCAAAGTCTTGGACAGCCGCCTGCAGC 302 36 100.0 31 .................................... CCAACGCGGACAAGCGCCTTTTTAAGTTCAG 369 36 100.0 30 .................................... GGGCACTCCTGCTATCTCCTACTCTCATTA 435 36 100.0 30 .................................... TCGGGGATCCGGATGCTCTTTTAAAATATG 501 36 100.0 30 .................................... GTTTAAAGGGAAGATAGTTACATCTGTCCC 567 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 99.3 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : TTGTAAATTGTTCCCAAAAGAGCGCTGAATTAGTTTTCGGCAAATTTACTTTCGTAATTTGGGGTGATATGATAATGCTCACGAGTAGAACCTTTTTCTCCACG # Right flank : AAACTAGCACATTATTTCAGACACCTAATTTCAAATTAACTCCGGTGAAAAACCTGAAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //