Array 1 427215-428522 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDNE01000002.1 Salmonella enterica subsp. enterica serovar Newport strain 195 NODE_2_length_720195_cov_15.2114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 427215 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 427276 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 427337 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 427398 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 427459 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 427520 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 427581 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 427642 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 427703 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 427764 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 427825 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 427886 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 427947 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 428008 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 428069 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 428130 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 428191 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 428252 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 428313 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 428374 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 428435 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 428495 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 445192-446868 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDNE01000002.1 Salmonella enterica subsp. enterica serovar Newport strain 195 NODE_2_length_720195_cov_15.2114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 445192 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 445253 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 445314 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 445375 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 445436 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 445497 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 445558 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 445619 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 445680 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 445741 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 445802 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 445863 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 445924 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 445985 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 446046 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 446107 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 446168 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 446229 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 446290 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 446351 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 446412 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 446473 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 446534 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 446595 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 446656 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 446717 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 446778 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 446839 29 100.0 0 ............................. | A [446866] ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //