Array 1 105391-105967 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAI01000004.1 Salmonella enterica subsp. enterica serovar Cubana strain 98-0352 NODE_4_length_365499_cov_4.28839, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 105391 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 105452 29 100.0 32 ............................. TCCATAGTTGCCGTTTCAACGGCTAACACTGA 105513 29 100.0 32 ............................. GCTACGAAGCGCCGCTGGCCGTGGCCTATACC 105574 29 100.0 32 ............................. TGCCGAAACTGGTGACAGAAACGGTGCAAAAG 105635 29 100.0 32 ............................. TAACGGTTGCCGAGGTTCGCGCCGCTGTGGCC 105696 29 100.0 32 ............................. GTTTGCAGAGATTGAGCCGTTCCCCGCTGCTG 105757 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 105818 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 105879 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 105940 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCAATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACATTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123201-125307 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAI01000004.1 Salmonella enterica subsp. enterica serovar Cubana strain 98-0352 NODE_4_length_365499_cov_4.28839, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 123201 29 100.0 32 ............................. CTGGCCGCGAGCGCCTGGTATACGGTTTATGA 123262 29 100.0 32 ............................. TAGCCGGGTGTTATGCGAGCTCGTCAGGGAGG 123323 29 100.0 32 ............................. CCAGCGGCAACCCGATCACCATCGAAGAAGAC 123384 29 100.0 32 ............................. CGATACGCATTAACCAGCACGTCGAGTCGGTC 123445 29 100.0 32 ............................. CCAGTTTGTTGATCACGTCTGCAACCTGGCTA 123506 29 100.0 32 ............................. TCGTGATCGACGAGGCCGCATTCCACGAGGCA 123567 29 100.0 32 ............................. ATATCGCTCGCTTAAAACTCTTAGGAAAAAAA 123628 29 100.0 32 ............................. TCATCCTAATTGTCAGCGTCCCCCCCACTGGA 123689 29 100.0 32 ............................. TGAAGAATCCAAACTCCGTGACTTTGAGAAAG 123750 29 100.0 32 ............................. AAATAGGTAAGGCTATGCGTCGCGGTGATAGC 123811 29 100.0 32 ............................. GCTTTCAAGTTATAATTGGTACACTTCTTAGT 123872 29 100.0 32 ............................. TCTTAATACGCGTGAGATCCCGAAATTTTTTG 123933 29 100.0 32 ............................. GATTGACTTAAAGATGAATGTAGAAAATATTA 123994 29 100.0 32 ............................. TGGGCGAAAGCATTTAATCGCGCAGCGGGCGA 124055 29 100.0 32 ............................. ACGCTGGCAACAGCCCCACACTCATCCGCCAT 124116 29 100.0 32 ............................. CTGTATGAATTACCCCTGCTGCCGGGTTCTTC 124177 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 124238 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 124299 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 124360 29 100.0 32 ............................. GCGGAGAATTATATATCGGAATGTTACAGGAA 124421 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 124482 29 100.0 35 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAGGTG 124546 29 96.6 32 T............................ CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 124607 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 124668 29 100.0 32 ............................. CCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 124729 29 100.0 32 ............................. CAAACAATGAAATTTTATTTGACAAATTGGCG 124790 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 124851 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 124912 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 124973 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 125034 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 125095 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 125156 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 125217 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 125278 29 93.1 0 A...........T................ | A [125304] ========== ====== ====== ====== ============================= =================================== ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCTAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //