Array 1 260073-263144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLO01000001.1 Streptococcus equinus strain AG46 BV58DRAFT_scf7180000000002_quiver_dupTrim_6839.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 260073 36 100.0 30 .................................... AATTTGAAACAATTCTTTTGCAAACACGAT 260139 36 100.0 31 .................................... CTGTCGGTGGTATTGCTGATTGGATTCGTGC 260206 36 100.0 30 .................................... TCAAATGTAGATATTTTGATGGGAACACTT 260272 36 100.0 30 .................................... GAATAGACACGATTAAAAATCCTAATACCT 260338 36 100.0 30 .................................... GGATAATCAAATTTTCAACATTAATTCTAT 260404 36 100.0 30 .................................... AGAAAGCACCCAAAGGAGCGAACACGGCGC 260470 36 100.0 30 .................................... CGTTTTAATTAATTGGTTTGAAAGTCGTCG 260536 36 100.0 29 .................................... CGTACTTTAAATACCATTGACGTTGACAG 260601 36 100.0 30 .................................... TGCTATGACTGCGAACCGTCATATTGCAAG 260667 36 100.0 30 .................................... ACGCTATGTTTTTTACCTCTTGGAAGTAGC 260733 36 100.0 30 .................................... AGGGAGAAGTGAGTTCATGTGGTTATCAAA 260799 36 100.0 31 .................................... GTGGCGCGCTAAATACACTTGGTGGCACTTG 260866 36 97.2 30 T................................... CTGATTTGAGAACAAAATACAAAAACGCTA 260932 36 100.0 29 .................................... TTTCCCAAGAAGGTGTTGTCACTTTAATT 260997 36 100.0 30 .................................... TAACTTCGTCATCGTACTGTAGGACTTTGT 261063 36 100.0 30 .................................... GCGGCTGCAAGGCTTGGTCTATTTTGGGCA 261129 36 100.0 30 .................................... CTCACAAAGTTATTAAAGAGTATTTCAAAA 261195 36 100.0 30 .................................... ATCGAGTTCTTCTTTTGATTCATAAATCGC 261261 36 100.0 30 .................................... TGTTAGAGTTGCTTTTTTCTCTTTCGTTTT 261327 36 100.0 30 .................................... AAATTATTTAAGAATACAATGTTTACTGAC 261393 36 100.0 30 .................................... TCCAGCCGTTCCGCTTGTCGTAAAACTTGA 261459 36 100.0 30 .................................... CTAAAAAATCTTTATTGTCATATAACTCTA 261525 36 100.0 30 .................................... CTATGTGGAGAAATAGAGGACTATTATAAT 261591 36 100.0 30 .................................... CTATCAATAATCAAGATTTTGATACTAATA 261657 36 100.0 30 .................................... CTCACCATTCTATAATAAGGTGGTTATCCA 261723 36 100.0 30 .................................... TTAAAGAACTATGTTAATACTTCTCCTATA 261789 36 100.0 30 .................................... ACATGTGAGTAGAAGCAAGCGCTCCGCCTT 261855 36 100.0 30 .................................... CTCACCATTCTATAATAAGGTGGTTATCCA 261921 36 100.0 30 .................................... TCGAGGCGAAGCTGGACTTAGCTAATGTAA 261987 36 100.0 30 .................................... TGACGCAATCACTTACGCTGTTTCAGTTTA 262053 36 100.0 31 .................................... TGACGCAATCACTTACGCTGTTTCAGTTTAG 262120 36 97.2 30 T................................... TATTTCAACGGGCTTATTCCAGCTAAACTA 262186 36 100.0 31 .................................... CCATCATTTTCATTTTGTCCGCTAGTAGTGC 262253 36 100.0 31 .................................... CCATCATTTTCATTTTGTCCGCTAGTAGTGC 262320 36 100.0 30 .................................... CGATGAATTTCTAACACTACCAGATGACTA 262386 36 100.0 30 .................................... TTTTAACTTATCACAATTGAACACTGTTGA 262452 36 100.0 29 .................................... GGAAGTCAAATACGCCAACACAAATGTGC 262517 36 100.0 30 .................................... AAGACACGAAACTTGCCAGACTTATTTCAC 262583 36 100.0 30 .................................... ATTCTTGAATTTGTTGATTGCTGCTTTGCT 262649 36 100.0 30 .................................... TCAAACGGCAGCAATTTGCGTTTCTGTCTG 262715 36 100.0 30 .................................... TGCTCAAATTGATTTGTTCGTAACATCAAT 262781 36 100.0 30 .................................... TCTATCGCTCCACAAGGTCGCGATGCATAC 262847 36 100.0 30 .................................... AGAAATTAAGGCGGGTATCGTTGTTGTTCA 262913 36 100.0 30 .................................... ATGCTGGACTTCTTCCTAGTGGTAATGCTA 262979 36 100.0 30 .................................... ATTCGCTTTCTAATTCAAAATGGGTATTCT 263045 36 100.0 30 .................................... TAAAATCGTTAGAAAAACGGCTGGTCGTTG 263111 34 83.3 0 ......................--C...ACC..... | ========== ====== ====== ====== ==================================== =============================== ================== 47 36 99.5 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Left flank : ATGGATGACTATCTTGATTATTCTTCATTTATAAGAATTTGTGAATCTATTACTCAGATAACAAGTGAGTTTCCAAATTTTTACTGTACCATTTTTCCTTCGAATGAAAGTTATTTGTATGTTACAAAAGAAACAATAGAGTCTGTTACAATTGTTTCGGAGTATATTGAATCCTTATATGATCTTGATTTTATGTATGAAAGATTTGTTGGAAGATATCCATCAAATAATATACCAACGAAAAAAGAATTTTTAATTCTGCTACAAAAAAATGCAAGTTATCTATTTAGCGATCAAATCACGTATGTGAGTTTAGGAATTTCAGATATGGTTGCTATTAAAATACTTAATAGCTTATATCAGTATGATAAGAAGTTGAGTTATCCCATTCCTTTGGTCGACCCGCTTGAAATCAGCTTTTTAAAGGACAAAGATTGACTTTTTTGTTTAATCAAATTATAATTCTTGTAGGGTACAAGAGCTAAAAATGACGATTTGAG # Right flank : CCCCACCTAGTTATTCACTAGGTGGGTTAACTCTATGTGGGTCATAGGTTTGCGATGAGTTGAGTTTTTATTATCTTCGCTTAAATAATAACGCTTTCTGCAAAAATTGTAAAATGATTTGCGGTAGCTGATTTTAGCGATATTTATCGTGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAATTACACAGCTAAAGATGGTGAAACTTACATTTTCCACTTGATTGACACGCCGGGGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1033033-1031552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLO01000001.1 Streptococcus equinus strain AG46 BV58DRAFT_scf7180000000002_quiver_dupTrim_6839.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1033032 31 100.0 34 ............................... TATGACAGAGACATAGACGGCAAGTGGACAGTGG 1032967 31 100.0 36 ............................... ACGCAGGTGATAACTTGTCAGCTATTGCTGCACGAG 1032900 31 100.0 36 ............................... AAGAAGCATGGAAAATAATTATCAATGATTTATCAG 1032833 31 100.0 34 ............................... AGAAGAAAAGAAAATCAATTATCTTAAAGCATTG 1032768 31 100.0 34 ............................... AATTTTGTTTACTTAGTTAGCCACCGTATGCACG 1032703 31 100.0 35 ............................... GAATAGGACAATAGAGTTAGGCAAAATAGAGGAGG 1032637 31 100.0 35 ............................... AAGAGAGACTAGAGAGCGTGAGACGTCCGTTCTCG 1032571 31 100.0 35 ............................... TTCACAACACACCTTACGAAGCAATTTCAGTTTTG 1032505 31 100.0 35 ............................... ACTGTCGATTTCGAATTTGATAACACCATAGTCGG 1032439 31 100.0 34 ............................... CTGCTAGTCAATTAAACGGCAAGAAAGCGAAACG 1032374 31 100.0 34 ............................... ATCAATCTCAAATGAGAAGTACATACCTGCTTTG 1032309 31 100.0 35 ............................... AAACCAAGCCCTTGCCCAGATGTACCATTGCTCGG 1032243 31 100.0 35 ............................... GTTACAAACGATTTACAAAAGGAATGTTGAAACAG 1032177 31 100.0 34 ............................... ATTTATGAAACTAAAACAATCGCAAATATTGGTG 1032112 31 100.0 35 ............................... TTCTTGACAACCTCTTTGTAAACATCTGTACGAGG 1032046 31 100.0 36 ............................... CGATTGTTGCAACGTCTGACGGTGAGATTATCAACG 1031979 31 100.0 34 ............................... AAATTGGCTTACAGTACTGATGTTATCGACGATG 1031914 31 100.0 35 ............................... ATTTAAAGCAATCGCGGACCAAGCAGCTAACTTTG 1031848 31 100.0 35 ............................... ATGTGTAACCTTATCATTAACACCTGCATTAGTAG 1031782 31 100.0 37 ............................... TTTATGGCAACTATTCAATGGTTCCCAGGGCATATGG 1031714 31 100.0 35 ............................... ATCACAGCTAGTAAGCCAACGACGCAAGTCTACGG 1031648 31 96.8 35 ........T...................... ACCCAAAACATCAAAGAAGAATACTCAAAATATAG 1031582 31 96.8 0 .......................G....... | ========== ====== ====== ====== =============================== ===================================== ================== 23 31 99.7 35 TCGCACCCCATACGGGTGCGTGGATTGAAAT # Left flank : AAGACAATACGAGGAGAATTAGATTCTTATCCCCCATTTTTGATTTAGGAGTGATCTTATAATGATGGTTTTAGTAACTTATGATGTGAATACAGAGAGTGTAGAGGGACGTAAGCGTCTTCGGAAAGTTTCAAAATTATGTGTGGATTATGGACAGCGTGTTCAAAATTCTGTTTTTGAGTGTTCTGTAACTCCTGCAGAATTTGTAGAAATAAAGAACGAATTAGTATCGATTATAGATCAAGAATATGATAGTATTCGATTTTACCTATTAGGAAAGAACTGGCAAAATCGAGTAGAAACAATTGGGCGTGATAATAGTTATGACCCTGATGCTGGAGTCCTACTCCTGTAATTTATAGGCGAAACGAGGTCACACAAAAAAAGTTGGGACACTCGCGCTTAAAAAAGGTAAAATAGTACTATAAATGATTTTATTTATTAGAATAATTTTTTATCATAATAATCATTTATGGCATAAACGGTGCAATATCGCACCG # Right flank : TAACAGGCGGTTAGGTTTCCAAAATTTTAAAACCTTGTATTCATATAAATTAAAAGGAGTCCCTATGTCATTTGAATCGGATATTTTTAGAAAAAAAACGTGTGGTCTTTGAGCGCTTGGTGGCGTTTGGATTTGAAAAATCTGAGGCTGGTTATGACTACGCGGAGCTGATTTTGAATGGCGATTTTGAGGTGCGGGTTCATGTTTCACTGGATGGTCAGGTGTCAGCAAGGGTGATTGATACCGATTTAAATGAAGAGTATCTTGCTCTTCATGTGCCAGCAGCGAGTGGGAATTTTGTCGGACAAGTCAGAGAAGCTTATCAAGAGGTTCTTGAAAGAGTGGCTGAAGCTTGCTTTGAAGCTCTGCCATTTGCTAGTGACCAAATGAATCGTCTTGCAAATCATCTAAAGGCAACTTATGGCGATGATTTTGACCATCCTTTTGAAAAATATCCTGAGTTCTCTTCTTTTCGCTATCCTGAAAATCAGAAGTGGTAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //