Array 1 68081-68616 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHOP02000058.1 Leptospira noguchii serovar Autumnalis str. ZUN142 ctg7180000008198, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 68081 37 100.0 34 ..................................... CTTCTTCTTGCATCCGGAGGTTCGCATGAGTTAG 68152 37 100.0 34 ..................................... TGTATTGCTCAATAACGCACATAATATTCTCAAT 68223 37 100.0 35 ..................................... AGTGCGGGTTTAGTACAAACAGCGTTGATTCCAAA 68295 37 100.0 34 ..................................... GCCTCCAAAAGGTTCGACAAACATATCTTCGCTT 68366 37 100.0 33 ..................................... TTTTTGAGGAAGATTTATGCTCTCGTCATAAAC 68436 37 100.0 35 ..................................... CATAAATAGATCAAGAAGCGTATCCGCCGCACGTA 68508 37 100.0 35 ..................................... CACCTCAATGTGGTCGACTTCGCCATTGGCATCTA 68580 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 8 37 100.0 34 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : TGTAATATCTTGATTTGTGAGAGTTCCCACATCACTTTACTGACAAACCTAAATTTTGTAATAGTTCCCACATTTAAATACTACAGATTCAAGTATTATAAAATTCTATTTTTTATTGTAATAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCGAACTCACGTAATATTACAATGACTCAAAACCAAATATTACGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACACGGGACTTTCGCACCCAAACGTATACACGTCGTTTGGCGATTGAATGGTTTTGCTTAACGTTTATTCAGTATGGTACATACAGACTCGCAATTATTATGTCTAGAAAATGTTATTAACCTTTTTCTTATACATCTTTGCGGGGCTTTTGAGCCGCT # Right flank : CAGGTCAAGCGAATCACCAAACTTCTTTTTGATTTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTCCTTTAACGTGAATACGATGTAATCAATGTAAAAACAATTGAGGCGAGAAACTTAGTGTTTCATAGATAGGCCTTTGTTTAGATCACGCTCTAAACTCAAATCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTGAACATTCTGAATTTCAAATGAAAGTATGGAATTTCCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGCGCTACATTCCATTTTTGTAAAAAACGAACCTTTATAAAATTACAATTTTTAGATACGCACATTCCACATAACGACCGTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATCATTTTTCCTCCATCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 13397-12932 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHOP02000054.1 Leptospira noguchii serovar Autumnalis str. ZUN142 ctg7180000008185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================== ================== 13396 38 100.0 34 ...................................... CGGATATGACTCCCGCCCTGAAAATATCCGTTGG 13324 38 100.0 34 ...................................... GTAGAATGGGGTCTTGACGCTTCTAGTGATCTTC 13252 38 100.0 32 ...................................... GATTATCGCAGAAGTCCGATCGAACCGGTTTA 13182 38 100.0 32 ...................................... CATATTTTGGTAATGTGATTCTTTCTTTTTCT 13112 38 97.4 33 ..........................G........... TTGTTTCGAAAGTTCAGAAAACGTTATTTTGAA 13041 38 97.4 34 .....................................C GATAGTCCGAGAAGTAAGCTTCTTTCCGTCTCCG 12969 38 94.7 0 ...................................T.A | ========== ====== ====== ====== ====================================== ================================== ================== 7 38 98.5 33 ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAACT # Left flank : ATAAGCCATAATTTCTGAAATACACAATCGATTAGAGCTTCTATATTTTTACAATATTCCATCATTTACTTATAATAAGGTCCTGCAAATTTTAGAAACAAATCCAGTTTGGCCAAAATTCTGGACGCTATGGTTTCTGAGTTAATCAAGTCTTGAAGTCCAGCGTCTGGACAATCATCTCAACAAAAATGAAAGGATACTTGAATGGAATTTAAGTTAAATTTCAAAATTAATCTTTTTAGTTACACAAACTTAACAATTCGAAATTCAATTTTCTTGACTTTAAACAGTTGATCATTTTATGATAAAACGCTTTTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGTATTTATATAGTATGGCTCCATTAGGTTCGCGATAATTATGTCTAGAAAAGTTAATAAAGCTTTTTCTAATACATCGATTAGGGCCTTTATAGCCGCT # Right flank : TTTAAAACATCTTCGAAAAACGTTAAACACGACTTAGTCGCCCCTGAAAAAGTGTTCAAATGACGAATAACGCAAATAAAACGTTATCCAGATGGATCGAATCAAAAACAAAACCACCGTAAAGCATCCAGAAGCCACGTAAAAGGCGGTGAAAATGAAACCAGAAGAAAGCTCAAAACAAAAAAATCAAGGTGAACTATTTCGCAACAGATTAGACCAAGATCATAGACACCCGTTGTATCAAATAGCGAACAAGATAGACTGGGAAAAGTTTGAGAAAGAATTCGGAAAGTATTACACAGAGAAGATGGAATACCGGGCTTACAAATACAATTGTTAGTTATACTTCACTACTTAGAAAACGCGTATAACGTGTCTGATGAGAAGGTTATTTAGAAAATCAGTATTGGCAACATTTCAAGTGACTAGGTTTTAGTCTTAGATGTTAGTTATATTTTCGTAATAGAGCGATTTCGGTTTAAACAAAGTAAAATCTCTCT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 1280-1952 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHOP02000049.1 Leptospira noguchii serovar Autumnalis str. ZUN142 ctg7180000008186, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 1280 29 100.0 41 ............................. AACCCAGTTTCGTTGAGTATAGTTCTAAGTCGCGTTTCTTC 1350 29 100.0 42 ............................. AATTTTATGCTAATGGATCAGAACTTTCTGGTCCGTTTCTTC 1421 29 100.0 44 ............................. CCAAGGACACATCAAACACCCTACCAGACTCCGACCGTTTCTTT 1494 29 100.0 43 ............................. TAAATACCTCTAACGTTTCTACAATCTTATACTGAGTTTCTTT 1566 29 100.0 43 ............................. AAGTGGATGAATATTCCACACTGTGTAGAGTCCCGGTTTCTTC 1638 29 93.1 43 ...............G..C.......... TTGTCATAGATCCGAACAAAACAATTACTCTTTCGGTTTCTTT 1710 29 100.0 42 ............................. ACGTTGGGTCGGTCCTATCTGTGACGTTGTATTGGTTTCTTT 1781 29 100.0 43 ............................. GGATTGCAAGCCACTTAGGAGGATCTGGATTGTTCGTTTCTTT 1853 29 96.6 42 ...............G............. GGAACAGAGGTTTCGAACAAAACTTCGTTCGTTTGTTTCTTT 1924 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================ ================== 10 29 99.0 43 CTCTTGTTTGAGAGGAAGTGGATTGAAAC # Left flank : AGAATTTTACTAGGTTGTTTCAAAGCTAAAAACTTTGCGAATGTTCACCGACGAGTCACTGTTTTACTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCTAAATCTCTAAAATTCGTAAGACCTAAAAAATATTTTTTTTAATTTTAATTTGAGACTGCTTCTAAAAAATCCTTTTGCTTCTTTTCAAAAAATTTCAGTTAGGTGAGAACTTTAACTTCATTTATAGCTTAAATCTATCTTTCCTGGACTTCCTTGTTATAGGTTCGCCTTTGAGTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATTTATTACGGACCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATTGAACAGATTTGCTTAACAATTGTGCAGTATGCTGAAATAGGTTCGCGATTATTATGTCTAGAAAGTTTAATAAAGCATTTTATAATACATTATTTTCAACCCTATTAAGCCGCTGTTTCTTC # Right flank : CTCTAATGCTTTCATGTATTCCGATGCGATTTTAAGTTTCTTTCTCTTGTTTGAAGGCTACATAATAGAAGTGTCTAAAATTCCATTCCTGAAACGGTGATACTTTCAAAATTTATAATACTCTAATATATAGGATAAATAGTATTCTAGTCATCGATAGGCAAGAATGATAATTTCTAAGTTTTGTGGTAGTTCCTGCAAATTTAGGGAAATTGAATATCAAACTGCTACAGGCTAAATGTATAAACTATGACTGATTTCCATTGAACAAAAGTTAGTAGGAAAAAATTTTTCTAAAAATAGGAGTTCCTACATTCATTTTTATTTTTACAGACTGAGGTCTCTTTTTCGGAGAATGACTTAGAACTTGTCTCAAAACCGTCTAATATGGGAACTATTACGAAAATGGAGCGACATTAGAATTGTTTGAAAGATCGCAAATTGCTAAATGCGATTTAATTTATAGGAATTACTATACTTTATTAAATATTTCTAAAGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTGTTTGAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 32374-33412 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHOP02000026.1 Leptospira noguchii serovar Autumnalis str. ZUN142 ctg7180000008204, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 32374 37 100.0 35 ..................................... ATTGTCCTAGCCCCCTTAAAATCACACGCTCTCGT 32446 37 100.0 34 ..................................... ACTAGAGACGACTACAATTAAAACCGGAATTGAA 32517 37 100.0 35 ..................................... GATCTCGGTCTGAATTTGTTCCACCATATCCGGAT 32589 37 100.0 35 ..................................... CATTAACGTCTGTTTCTCTCCAGATGGAGATTTGT 32661 37 100.0 34 ..................................... CTAATACTATATAAATTGTTTACCGTAGAGTGTT 32732 37 100.0 34 ..................................... TGTGATAACGGTAACGGTTATTTTTCCGTTCTTA 32803 37 100.0 34 ..................................... TTCTAACTGGGCATATATCGGAGCGTTCAATTTT 32874 37 100.0 34 ..................................... TTATACGATGGCTTTTGAGACTTATCTCAAACAA 32945 37 100.0 35 ..................................... CGATCCGAAGGAGTTGGAAAAACGCCGCGAACGTG 33017 37 100.0 35 ..................................... AATACACTGTATGCGTATTCGACGGAAGATAAAAA 33089 37 100.0 34 ..................................... ATAATCTAGCACAGCGGAAAGAGGGATGTACGGC 33160 37 100.0 35 ..................................... CTGTGGTGTCATAAACATATCGCCTTCATTTTTCT 33232 37 100.0 34 ..................................... TTTTGTTGCTTTTACGAAAGTCATCTTATCCCTC 33303 37 100.0 36 ..................................... CGAAAACAGACAAGTTACATTGACAGCGGGGCCTCT 33376 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 15 37 100.0 35 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : AGAAAGATTACCACATTCCAAAGATAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATTGAGTCCTTTTTTTTAAATCGTATATAGTTAGTTGCCATACAAAATACCTAAACGTATAATAAGAGTTTTATAAAAATGCCATATTTGTGATCAATATAATTTTAAAATAAAACAATCGGTAAAGAACATATTTAGTTGAACAACATTTTTTGTTTATTTTTATAGAAAACCCTCCCCATTGCAAAAATGAAGCGGTTTTTTGGTTTCCAATATTCTTGACTTTTAAGAGGCGATCATTTTATGTTATAGCACTTTTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGTCACGTTTAGGTTCGCAATTATTATGTCTATAAAAGCTAATAAAGCTTTTTCTAATATATAAATTAGTATCTTTGTGGCCGCT # Right flank : CTGAAAAAGGTTCAGAAGTAATCTTAGAAATTAAAATTTCTTTCTCTTATTAAAGAAACGGGTTGAAACCTCAAAAAGACGATTATTATAAAAATAAAATTATATAACGTAAGTTAGGTGCCGATTATTTTTTTGTAAAAAAGTATGCAAATTGCTATAAACGATTTGAGTTCAAGTTAAAAAATGTAGAAATTAATACATTCTATAAATTGAATATACAAAATCTATCGTTAAACTTTATAGTAAAATGCAATTATGAGGCGCAGCTCGTGGGAACCTCATACAAATTAAGAATATTCTACCTCGATTTTCCATAGAAGATTTTGTCAAATTGCCGGTTGAATTTATGGAAGGATTTGAAAAAATAGAGTTTCGGAGAATGTTTCAAAATAATAAGTCTGTAATCAGGTTGTAGTAAGTAAGCATAATTTGAAGTTCTAAATCAAATAAGTTGTGTTTTATCATATTTCCTAAATTAGAGTTGTTGAAAAATTTGGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 7775-7167 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHOP02000018.1 Leptospira noguchii serovar Autumnalis str. ZUN142 ctg7180000008172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 7774 37 100.0 35 ..................................... TCTCGAAACAGAGGCTCGTAAATACCGGGGTGAGG 7702 37 100.0 35 ..................................... TATAATAAGATAGACATGCCCTCTACCGTTTTTGC 7630 37 100.0 35 ..................................... CATTTTTGCTTGGACTAATTGCAACTGTTCGCCCT 7558 37 100.0 34 ..................................... ACGTCATTTATATCAAAATCCCTAAACGATTCTA 7487 37 97.3 35 ..................T.................. TATAACTGCTATTTTTGATCCAAAGGCACCAAAAG 7415 37 100.0 34 ..................................... ATGACTCTTCTTGATATATCTCCATAAAGTGCGT 7344 36 81.1 35 ....AA-......CT.......A.....A........ TTCTTGTTGGTCGACTCCATAGCCAATTGGAGCGG G [7324] 7272 35 83.8 34 ....AA-..............GA.-............ TCCTCTTGTTTATAACAACCTCGAGACCATGGTC 7203 37 91.9 0 ..............A......G.A............. | ========== ====== ====== ====== ===================================== =================================== ================== 9 37 94.9 35 GTTTCTTCTTCTTACTTTAGAAGGAGTGGATTGAAAC # Left flank : CAAAGAAAAAATATAATTTTTCGCCTAACATCAGTTAATTATAAGTAGTAGCTTCTCTATTACTTATAATAACGTGCTAAAAACTATATTTCGAAGTTTTGTGTGTTGTTTCTCAGTATTGATTTGTTAAATCGTAATTTGTGGTAGTTTCTACATTTTTTATATAAAATTTAGTTTTCTATTAAACGTCTAGTTCGGTTATAAGATCATTCAAAATCTCTAAATTCATACAATTTTAAAAAAATTTTATATACCTTTCAAATCCTGCTATAAGTTTTCCTTTGAGTAGCCGATCCTTTACATTGAAATGCTTTTTTGCGAACCTGTTTCTCCCGATTCTTTGCAGACCTTTCGCGCTCTTGTATTGATTCGTTGTTTGGCGATTTGACAGTTTCGCTTAGCATTTGTTCAGCATGGTAAAAATAGGTTCGCAATTATTATGTCTAGAAAGCCTAATAAAGCTTTTTATAATACATAATTTTCATCCCTATTAAGCCGCT # Right flank : CAGTATTTTAAGTCTTCTTCTACTTCGAAATATGTTCCTTCTTCTTGTTAGAGGAAGCAGACTAAAACTGAACGCGGATTTATATAACGTGAGTTCAGTGTAAAGAATTCATTTTTTTGAAAAAAGCTGTTGGTTTTAAACTTTCTGAATCAATTCCTAAAATGTGGGAACTCATACTGTTTAGAAATTTGTAATGTGACTTAATCTGTGGGAACTACTGCAAACCACGATTTTAAGAAAAAATTCTAAAATGTGGGAACTCATACTTTTAGAAATTTGTAATGTGACTTAATCTGTGGGAACTACTGCAAACCACGGTTTTAAGAAAAAATTCTAAAATTGTGGGAACTCATACTTTTAGAAAATTTTTCTCAATCAGAACTCACGTTAAAATGAGATTTAAATTTTGATGATGCCGCAAAACAGCGATTTTATGTAAAAATCAGATGGGCGATGGACTCTTTTTGTAATAGTTCCCACAATTTTCAAAGTTTAACTGG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCTTCTTACTTTAGAAGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 61174-61873 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHOP02000060.1 Leptospira noguchii serovar Autumnalis str. ZUN142 ctg7180000008214, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61174 29 100.0 32 ............................. GACAAAGATCAGCTTGAACGCGTTGTAAATGC 61235 29 96.6 32 ............................A GCAAATGCAGTTCCAGTAAATAACGATCCCGA 61296 29 100.0 32 ............................. AAGTTATTAAACCTTTTATAGACGGATTCGTA 61357 29 100.0 32 ............................. AAATCTTTATACTGCAATTTCAGGCGCGCACT 61418 29 100.0 32 ............................. AAATCTTTATACTGCAATTTCAGGCGCGCACT 61479 29 100.0 32 ............................. ATTAATAAGTGTGAAAATGCAAGTTTAACGAA 61540 29 100.0 32 ............................. GCGATGCTGACATCTGGGTTGAGTGGGTGCCG 61601 29 100.0 32 ............................. AATATTCACGGTATTATTGTTCTGTAATATTC 61662 29 100.0 32 ............................. GGAGAAATGGAATTAACAAATCTTTACTATAT 61723 29 100.0 32 ............................. AAAGGATTGCTGTTGAAAATTATATAAGTGAT 61784 29 100.0 32 ............................. CAAGAATCGAAAATGAATCGTCAGTCGTTAGT 61845 29 93.1 0 .........................TT.. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 CTATTCCCCACAGGCGTGGGGTTGAACCG # Left flank : CAAAGTAAATTGTTAAAACGCATTATTCCCGATATGAAGGAGTTAATCTATGGTGGTACTGATCCTGGAGAGGGTGAAGACTTCACAGAGGGGCGAGATGTCGCGGTTAGCCATTGAGTTAAAACCGGGCGTTTTTGTTGCAACCGTTGGCGCAAGAGTTCGTGATCAAATCTGGAAAAAGATTTGTGAAGAATGGAAATCGGACGCTCTCATGCTCTATTCGAGCAACACCGAACAAGGTTATATCATTCGTTCGAATGGAGATCCATCCAGAGAGATTGTCGAGTTTGACGGTATTCAATTGATTGCCAAGCCCGATCCGAAAAGTGACCATATACAAATTACCGATGAGATTGACGAATCAAATACCGAAATCAATTCTCCATTTCCAAATATAGAAGAATTTTTTGTAGAGAAGGCAGACTCTCTTCGCGCAGAACTGGATCAAAATCTAAATAATCCGTAGACATAATATTAGATCTACTATACAAATTCTTAGA # Right flank : GAGGATTTCGTATCTCACTGACCTCTGACATTCCTCAAAAAGCTTGGCCTTTACTTTGCTGATCCGGCAAACCACTGATTGCTTGTCTTTCCTTGCACAACATATATACTACGATAGAGAGTTTGTCCTATTTGAAATCTTCATTTAGATTTCTTCCTGGCGTTGTTGAATATTAGCAAGGCCCCAACTGTCCTCAAGGCTTTCGTAATAGGGTAGCTCACGACCAACCGCAGCACCGAGAAGCGACAGTGTCGCTGCGGATGCGAGGTTACGACTCGTGTGAAGCGAAGGCGAAGCGCGAAGTCGTGGGCGTGAAAAAACAAAAAGCCAGAACTGTCCTCAAGGCTTTCGTAATAGGGCAACCTCACGACCAACCGCAGCACCGAGAAGCGACAGTGTCGCTGCGGATGCGAATGGTTCGTCATCCCGGTCCGGAAAGGGGGCGTTTCCCAGCCCTTACCGGGCTGGGCCGGGCTCTCCGCTCCGGTCCTTCGGACCCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACAGGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //