Array 1 94335-92370 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJJK01000002.1 Salmonella enterica subsp. enterica serovar 4,12:i:- strain STM3910 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 94334 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 94273 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 94212 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 94151 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 94090 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 94029 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 93968 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 93906 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 93845 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 93784 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 93723 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 93662 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 93601 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 93540 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 93479 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 93418 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 93357 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 93296 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 93235 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 93174 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 93113 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 93051 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 92948 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 92887 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 92826 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 92765 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 92704 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 92643 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 92582 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 92521 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 92460 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 92399 29 96.6 0 A............................ | A [92372] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111777-110467 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJJK01000002.1 Salmonella enterica subsp. enterica serovar 4,12:i:- strain STM3910 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111776 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 111715 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 111654 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 111593 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 111532 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 111471 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 111410 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 111349 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 111288 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 111227 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 111166 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 111105 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 111044 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 110982 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 110921 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 110860 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 110799 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 110738 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 110677 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 110616 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 110555 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 110494 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //