Array 1 745578-750495 **** Predicted by CRISPRDetect 2.4 *** >NC_022097.1 Treponema pedis str. T A4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 745578 36 94.4 30 A...........................A....... AAATGAAGCACAATTCTTTATTGAATATCA 745644 36 100.0 30 .................................... TCGTGATGTTCGGGGTGATGAGAATTATTA 745710 36 100.0 30 .................................... TTATAGACAAGGACGATTACAAGTATATGG 745776 36 100.0 30 .................................... CACGGCGTTGCCAATTCCAGACAGTTTTTA 745842 36 100.0 30 .................................... TCTTCCAATTGGTGAAGATGAGCGAATAGA 745908 36 100.0 30 .................................... AAATCTATATCAGATTTACGCTGTCTTGTC 745974 36 100.0 30 .................................... GAAAGGTTTACCCTTTCAACTCACCCCGTA 746040 36 100.0 30 .................................... AATTTGCAGAACACGAAAGCCGGTTAAACA 746106 36 100.0 30 .................................... TTGGCGTCCGAAAGGGCAAGTTCTTCTTCC 746172 36 100.0 30 .................................... AAAAAGCAAAAATTGAAGCGGCTTACGACA 746238 36 100.0 30 .................................... TAAACTCCTGGAGGTATAGTCATCTCACGC 746304 36 100.0 30 .................................... CGCTCATAATCGCATAACGTGTTTCATCAT 746370 36 100.0 30 .................................... AAGCCGAAAAAATACTTGCCCCCACTTGTT 746436 36 100.0 30 .................................... AAAAGCTGTGTGCGGATACAGAATAGGTGA 746502 36 100.0 30 .................................... CAGAGCATCTGAAGCATGCGGGGTAGCATA 746568 36 100.0 30 .................................... CTCCGGAAGACAACCCCGACGCTGACGCTT 746634 36 100.0 30 .................................... ACACACAGACGGCGAGCTTGCCGCTTATGA 746700 36 100.0 30 .................................... GTATACCAATCTTCTTTGAGATATCATTGT 746766 36 97.2 30 ..........................A......... GTCGGTTCCGCAGATATAAAGCGTCTCAAA 746832 36 100.0 30 .................................... TCTGCAGCAAAATGCTAATTAAAGAGCCTA 746898 36 100.0 30 .................................... CGGCCAGCTTATTACGCCTGTTGCCATAAA 746964 36 100.0 30 .................................... GCCGAATATAATTTGATTTTTTGACACTCT 747030 36 100.0 30 .................................... AAAATTAGGCATCTTATTATTTTAACTCCT 747096 36 100.0 30 .................................... AAGAGCTGTCGATGCGTATTCAAGATGTTC 747162 36 100.0 30 .................................... GCTGGCGGCGGGCTATCTCCTTCTTGGACT 747228 36 100.0 30 .................................... TTTAAATATCAAAATGCTATCTGACTTACA 747294 36 100.0 29 .................................... TGAGGGCTATTTTTTTAACTATAATATAG 747359 36 100.0 30 .................................... AGCAGCGGAAGAAATTGCACGCAAGGCGGC 747425 36 100.0 30 .................................... TCTAATCGCCATAATACACCTCCTTAAAAA 747491 36 100.0 30 .................................... ACATTCCGCCGCTGTCCAACCCGCCGAAGT 747557 36 100.0 30 .................................... CTTGATTTTTATCGCATAAAACGATACACT 747623 36 100.0 30 .................................... TTTGAATGGCCGCGATTTTAGCCATTGCGT 747689 36 100.0 30 .................................... ACAAAAAAGAGCTCTCAAAAGTAAAAGCAA 747755 36 100.0 29 .................................... GAAGAGGAGTATAACAAGCGGCTTACGGA 747820 36 100.0 30 .................................... CAGATCTAGCTAAAACCGGCGATATTATCT 747886 36 100.0 30 .................................... GTCATACACTGCTTTATCCTGCTTTTTTAC 747952 36 100.0 30 .................................... GAGTTCCTCCTTAATATCAACATCGGTTTT 748018 36 100.0 31 .................................... CTTAGAACGTCAACGGCGTTGAATAAGCCGG 748085 36 100.0 30 .................................... TTGGGCTCCCAACGGGGGAGGGTGCCTGTT 748151 36 100.0 30 .................................... TGGATAAGTTTTATTTTTAATGTTTTTAAA 748217 36 100.0 30 .................................... TTCGATTCTTTTATGTTAGCTTTCATCGTA 748283 36 100.0 30 .................................... AAAAAGGATTCGGATTTCGATAACAATCAA 748349 36 100.0 30 .................................... TAATAAGAACAAAAGAAACACATAAATTTA 748415 36 100.0 30 .................................... CTGTCCCCTTTTGTGTGAATTTTCCTGACA 748481 36 100.0 30 .................................... TCGGATTATATTACTAAATTTAGAGTACCT 748547 36 100.0 29 .................................... TGACAGGAATTAATTCATCTGGAATATTA 748612 36 100.0 31 .................................... TAGTAATATAATCAGAATGCAAAGCTTTCGC 748679 36 100.0 30 .................................... GTCTTAGACCGCATTTCATCATATCGACCC 748745 36 100.0 31 .................................... ATATAAGGAGTTTAATATATGGACCCGTTAA 748812 36 100.0 30 .................................... GTACTTATAATACTTAAGAAGGTCATCACG 748878 36 100.0 30 .................................... TCTTGATAGGGGAGATGTGCGAACGAGGGC 748944 36 100.0 30 .................................... AACTGAATATGAAGGTGGCTCTGTTACTTC 749010 36 100.0 30 .................................... GTATTTATAGTATTTGAGCAAGTCATCACG 749076 36 100.0 30 .................................... GCAGGAGAAATTAAACTTGTTGGAAGTTAG 749142 36 100.0 30 .................................... GTTTATCCCCTCAACTCGCCCCGCAGGGCT 749208 36 100.0 30 .................................... ACGCCTTACGAATATCTAAAGCATCAGCTT 749274 36 100.0 30 .................................... AGATTTGCAAAACAAACTGCGTTTGAATTA 749340 36 100.0 30 .................................... GTCTTAGACCGCATTTCATCATATCGACCC 749406 36 100.0 30 .................................... AAAATAGAAAGAAAAATTAACCTTGTCGAG 749472 36 100.0 30 .................................... ATTTTTTGTTGAAGTTTATTTATTGTATTT 749538 36 100.0 30 .................................... CTTTAATCCATTTATCTACCGTATTTATAG 749604 36 100.0 30 .................................... CCTATCTTTTGATAGGCTTCAAGAGTGCCT 749670 36 100.0 30 .................................... ATGTAAAGTCGTTTTTTAAAGTCCCGTATA 749736 36 100.0 29 .................................... GGCGGGCAATATAGGGAGTGGCTTCATTG 749801 36 100.0 30 .................................... TAAGGCTTCATACAGGTATTTTGGCAACAA 749867 36 100.0 30 .................................... GCGCAAGCGTAAATGTCGAAAAGGCGTTTT 749933 36 100.0 30 .................................... ATTACCGAAAAACACAGTGAAGGTAAAAAG 749999 36 100.0 29 .................................... TTATAATCATTCCTTTAATGCGGCGCCTG 750064 36 100.0 30 .................................... ACTCCGATTTTGAAAGGTTTCCAAATTTGA 750130 36 100.0 30 .................................... CACACATGACGTCGTGCTTTACGACGTCTA 750196 36 100.0 30 .................................... ACATCTTATTGAATATGTGGAGGACTTGGA 750262 36 100.0 30 .................................... CTTATAACTAATATATCGTCTCCAACTCTA 750328 36 100.0 30 .................................... AAATCTATATCAGATTTACGCTGTTTAGTC 750394 36 100.0 30 .................................... TTGTCTAAAATGAATATAAATATCAATTTT 750460 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 75 36 99.9 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : TATCTTTTATATCCAATCTTAATGTTGAAAATCTTTTATTCATATTGATACCATATTCACTATTTTAGTCTACTTTCAGATAAAAAGCAATATACGAGTACCTATACCTTTCGATTGGACTTTCATTAAACACATTAAAAATCCGGCATATTCCTGAAAACATTTCGGAAACTAAATAATGCACGGGAATTCCGATGCATTATTTACTCTAAGAGCAAACAAAACTTTTAATCCGCCTACATATCGAGCAGCAAAACCAAAATGCAATACTCATATTGCTAAATTTCGATTTGTTTATAGAAATGGATAAATTACGGCTATAATATCAGTAAGCGCTTTTTCATCAGTTAAAAAAATTATTTTGCGGAAATAAAATGTATTACTCTTTCGGATCAACAGGAAAAATTGCATCTACAGCCTGCTTTCTTTCATCTTATGCTCCTATCCCAGGAGACACAAACTTTCCAAGTTCACCTTGAAATTGGTTTAGTGTATATGTT # Right flank : TGTGAATGGTGTAAACCTATACCCAATATACATTTACTCGCTTTTTAACACAAAAAAACAGGCTTTTTGATGATGATTTTTTTCAAAAAGTCTGTTTTTTTAAAAAAATTCAAGTTGGGAGGGCGTTTTTTTCTTTTTTTCAGGGGTTTTTCCGATAAATGATTCTATTTCACCGAACTGTTTGTCGGTAAAACGGAGAATACTTACCTTTCCTTCACGCGGAATATGCTTTTTAATATACTTTACATGCACAGCGCAGGCCTCTGCACTTCCGCAGTGCCGGTAGTATACACTGAATTGCATCATAGAAAACCCGTCTTCTATGAGCTGCTGGCGGAATTTTGAAGCTCTATGACGTTGCTCTTTGGTATTTGTCGGTAAATCAAACAGGCAGATAATCCACATAATCTTATACGCATTAAATCTTGTATGCTCCATAGTTAGAATTCCGGCAACTGTAGTTTTTCCGTTTTCCCCGTAAGTATTTGAGCAAAGGAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //