Array 1 33921-33094 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFOH01000007.1 Campylobacter jejuni strain isolate_S1 NODE_46_length_94785_cov_76.721756, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 33920 36 97.2 30 T................................... TGATTTATTAGTAACCCATCAAGTTGGCTT 33854 36 100.0 30 .................................... GCACCTGTTTTTGATTGAACAAAACAACCA 33788 36 100.0 30 .................................... TGCACTGAAATAAATGAGTTTATAGCAAAT 33722 36 100.0 30 .................................... AGAAAAATCAAATTGTGTAACAGGGGTGTT 33656 36 97.2 30 .........T.......................... TTTGCGACTTTCAATCTCTTTAATTGTTTG 33590 36 100.0 30 .................................... AAATTACCTTTTGAATATATAAAAAAAGCA 33524 36 100.0 30 .................................... GCATTGCTTTACTACATAGCCAGTCGTGTA 33458 36 100.0 29 .................................... TTGTCAGTTTAGATATGACAGGAAGTTTT 33393 36 100.0 30 .................................... AAAAGCGATAATCTTGCTTTAGGTAGTTTA 33327 36 100.0 30 .................................... TTTTAGAGAGAGAATACAGGGAATTGGAGA 33261 36 100.0 30 .................................... AATGCTTTCAAAGAAAAAGATTTACCACAC 33195 36 100.0 30 .................................... TAATTATTTAAATCATCTTTCCTATTTCCA 33129 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : ACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATTATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAGCCTAAAGACTATATTTGCAAGGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTTGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAGAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCTCTTATGGTGGTGCCAAAAGAATGTGAAATGTTAGAAAATGAAAGTTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTTGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCAGAGTTTCAATCCACTAGGGT # Right flank : AGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTCTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTATTTGAATTTCTTCATTATTTGAATTTTTATATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTGGTTTCGTTATTAACTTTTTCGTTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCTCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAACATAAAATAACCTAATTTTATAAGATTGTTTCTAAATTTACTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //