Array 1 166447-167670 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYEX01000002.1 Campylobacter coli strain PSU101 NODE_2_length_212581_cov_192.909, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 166447 36 97.2 30 A................................... TCCATTCTCATGAAATATTTAGCCATTATT 166513 36 97.2 30 A................................... GCACCTGTTTTTGATTGAACGAAGCAACCA 166579 36 100.0 30 .................................... AAACTTTTTACAGCTTTGTAGAATATATAA 166645 36 100.0 30 .................................... TTATTTTCAAGTGAAAAGGAATAAAATGTT 166711 36 100.0 30 .................................... TTATTATAGCTAATACTGCTTTATTTTGAA 166777 36 100.0 30 .................................... GAACCTTTAGAGTATAACGATAATCAAGTA 166843 36 100.0 30 .................................... TTATGAATGTAATTTAAGTACAAGCTTTAG 166909 36 100.0 30 .................................... TAAATTGCTTAATTGTGAAAACCAATTATT 166975 36 100.0 30 .................................... AATCAAGAGCGCATAGGAAAAGATATATAT 167041 36 100.0 30 .................................... AAATAATTTCAGTAAAAACACTTGACAAAT 167107 36 100.0 30 .................................... TCCATTCTCATGAAATATTTAGCCATTATT 167173 36 97.2 30 A................................... GCACCTGTTTTTGATTGAACGAAGCAACCA 167239 36 100.0 30 .................................... GAGAAAATATAAAAAAATAAATAATTTCAA 167305 36 100.0 30 .................................... TTCGAATTCAAATTCCATTAAACATTTTCC 167371 36 100.0 30 .................................... ATGAAGTGTTTTAAAAAGGCTTAAAGGTAT 167437 36 100.0 30 .................................... ACAAAAGATACATATTTTATTGATAAAGAC 167503 36 100.0 30 .................................... AAATTTGCTTTATTTAAATTGGTTTGCCTA 167569 36 100.0 30 .................................... TATATATTAATTTTAAATTATTTGTCAAGT 167635 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.6 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : ATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAGCCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGTAACATAAAGTTTGAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTGGCGCCAAAAGAATGTGAAATTTTAGAAAATGAAAGTTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTCGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTAGGGTTT # Right flank : TAGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTCATGAAAAATAGCAAAAATTATGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGTGTTAAATTGGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAATTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAGCATAAAATAACCTAATTTTATAAGATTGTTTCTAAATTTACTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //