Array 1 96879-95875 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJWW010000019.1 Escherichia coli strain SA11 NODE_19_length_105581_cov_13.648377, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96878 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 96817 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 96756 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 96695 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 96634 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 96573 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 96512 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 96451 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 96390 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 96329 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 96268 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 96207 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 96147 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 96086 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 96025 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 95964 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 95903 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 229456-230704 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJWW010000004.1 Escherichia coli strain SA11 NODE_4_length_231047_cov_14.193742, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 229456 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 229517 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 229578 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 229639 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 229700 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 229761 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 229822 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 229883 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 229944 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 230005 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 230066 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 230127 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 230188 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 230249 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 230310 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 230371 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 230432 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 230493 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 230554 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 230615 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 230676 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //