Array 1 236893-237721 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFR01000005.1 Streptococcus massiliensis strain NCTC13765, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 236893 36 100.0 30 .................................... GTAGGATATTGTGTTCCTGACACTTTTTCA 236959 36 100.0 30 .................................... TTGAGCCCGCAAGGTGTTGATGTATTCCTC 237025 36 100.0 30 .................................... ATACTCCTTTTTGCCAATCTGGGTGATTTT 237091 36 100.0 30 .................................... CAATATTGGCTGAATAAAATTAGAACAAAC 237157 36 100.0 31 .................................... TTTTAACTATTATATACCAAAAAATAAATAT 237224 36 100.0 29 .................................... AAAGACGCTGCCAAGAACCTGTCTGACCA 237289 36 100.0 30 .................................... TCTATCCTACGACAAGAACGGCCTTGGGGT 237355 36 100.0 30 .................................... TATTTTCTACCAAGTTCACGGATAAGATAG 237421 36 100.0 31 .................................... AATCCAGACATTCAATTTAAAATTTTGTACT 237488 36 100.0 30 .................................... GTGACCAACTTAAGGATATGATGTTGCATT 237554 36 100.0 30 .................................... TTTTAGCTAATGCTTTTGTTCAGGTCGCAC 237620 36 100.0 30 .................................... CAAGGACTTGTCGGGAAATACATTCAAGCA 237686 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : GGATGACTATTTGACCTATTCTTCTTTTAGGATTTGTTGTCAAAAATTACAAGAATTATGCGAAATTTTTCCTAATCTGAATATTATTATTTTTCCTTCTAATGAGGGCTATCTTTATGTTAATAAAGAAAATATTGAAAATGTGAATATTTTTTCTGACTTGCTTGAGCATTTATATGAATTTCCTTTTATGTATGAAAGATTTATTGGGCAATATCCTTCTAATGATATACTTAGTGAGGAAGAGTTTTTGCATTCTTTGCAAAAGAATGCAGGCTATTTATTCACGACAGATATCGACCATGTAAGTTTATCTATCTCTGATATGGTTGCAATAAAGATTATCAATCATTTGTACCATTATGATAAGAAAATAGATTTTCAGTATCATCGTCCTAATCAGCTTTTAATTAACTTTCTGGAGGACAGTCATTGACATTCGCTCTCGAAGAATTTATAATGAATATACGAGTACAAAAACCAAAAAAGTTTCATTTGAG # Right flank : CTAAAGAAAGGGAGGTGAGGATATGACTAAGCGTAAAGCGAGGTATAAGAAAAAGGCTTAACGCTCTAAAGCTAATCACGCTAGCGACTGCAATCGCTGAACTGATTAAAACGCTTCTAGAGTTAGTTAAGCCCTAACCTCACAAGACTAAAAAATCAAATGACTTCTTAGCCAATCCTTTAGGTAAATTATAGCAAAGGAACTGACAAAATGCAAGAAAAAAAGCGACCAAGAGGACGACCAGCAACTGGAAGAATCAGAAATACAAGTTTTAGAATATTTGTCACTGAAAAAGAAAAAGAGATGATAAGACTTAAAGCAAGCCGAAAAGAAAAAAGTATGGTTGATTATATCATAGACTTAGTTAATCAAGATAAAATAAAATAGCGTGCAACTCGCCATCGCCAAATTTTGAGCTACACACTATCACAACATACCTGAAAATCAGATACGCCTTATTATACCACAAGCGTACCGTGATAGTAACAGTACGCTTTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 521072-520178 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFR01000005.1 Streptococcus massiliensis strain NCTC13765, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 521071 36 100.0 30 .................................... CACAAAACTCGCAAACACTTTCCAAGTTGC 521005 36 100.0 30 .................................... TGGACGTTCTGCAAGTAATCGTATTATGTA 520939 36 100.0 30 .................................... GTTGTGGTAGTAGGAAAATCTTCATTTGTT 520873 36 100.0 30 .................................... AAAAGGTATGTTAAAACAACCATTTTATAA 520807 36 100.0 30 .................................... GTTTCAACAATGAGAGTTTCATTGAGTTTT 520741 36 100.0 30 .................................... ACGCGGGAGACCGTGCCGGCCTCGCCGACT 520675 36 100.0 30 .................................... TACGGCCGAGAATAACAGCCTTTGGCTTAT 520609 36 100.0 30 .................................... ATGTAATATCTTGCGCCGCCTTGCTTGACT 520543 36 100.0 30 .................................... TAGCGCTCGTGGCGCTTATCGTGGCAGGCG 520477 36 100.0 30 .................................... CGACATTCCCATCTTTGTATTTTGGATAGT 520411 36 100.0 30 .................................... AAAGTTAAGAGTGTTTCCATGGCTTTTTTG 520345 36 100.0 30 .................................... AATCTAAGGCAGGCCTTGACTGCTAAAGAG 520279 36 100.0 30 .................................... AAGCTATCTGAATGTATTTTTACAGTTGGT 520213 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.8 30 GTTTTAGAGCTGTGTTGTTCTGAATGGTTCCAAAAC # Left flank : ACGAAAAAACTGAAATCAAGTCAGAAATTGAGCGGTTGAGCTCAAAAATTACCGACTTAATTGCTTTTGAATGTTTAGAAAATGAATTGGATTTAGCATATGATGAAATAACGCTTTTAGAACTAGTTAAAGCTCTTGGGGTCAAAATAGAGACCCAAAGTGATACTATTTTTGAGAAATGTCTTGAAATTATTCAAGTTTTTAAATATTTAGCTAAAAAGAAATTGCTCATTTTTATAAATAGTTGTTCTTTCTTTTCAAAAGAAGAAATGTCGCACATAGTTGAGTATATTCAGTTAAACAATATACATGCTTTGTTTATTGAACCGAGAGAAATCTATGATTTTCCGCAGTATATCATGGATGAGGATTATTTCTTAATGGCAAAAAATATGATATAATTATAATAACTAAAAGTTTATTGGGACTAATTCAGGCTGAAGTCTAGCTGGGACGAATAGCGCGATTACGAAATTTTGTAGAAAAAATCATTCTACGAG # Right flank : GATATTTTCTGGAAACTTTGTTTTTGAGGTGAAAGCCTCCTTTCTCTCAATCATAAAGATAAAATAATACAAAGAAGTACTGAACTTCTTTGTATTTTTAAGTTTTTATTGCATTTGCAATAAAAATAAGTTATACTATATAGGTGAGGAGGTTCTATGACTATTTTACGAGAGATTGGAGTGATTGCTCGGGCGCTGGATGCCATGGCAAATATTGAGTTTCGCCATGTGGATTTGGCAAAAGGGCAGTATCCTTACTTGGTTCGTATCGTGGAAAATCCGGGCATTATCCAAGAGGAGCTTTCAGACCTGCTCAAGGTCGACCGCTCAACTGTGGCACGTTCGGTTAAAAATTTGGAAAGAAAAGGCCTGATTGTGCGCAGGAGCGCCGAGGGCAATCTGAAGAATAAGGAACTTTTTGCGACGGAAGCAGGAGAAAAGGTTTATCCGCTGATTATCGCTGAGCACAGCTATTCCGAGCAAAAGGCATTGACAGGATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTCTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //