Array 1 24776-25085 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWH02000025.1 Leptospira kirschneri str. 200802841 ctg7180000005336, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 24776 25 100.0 46 ......................... CGGGTTATATCCTATAAAATATACACCCGTAAGAGTTTCAATCCAC 24847 25 100.0 45 ......................... GATCCGATAATGGATAGGAGCCATGTCCAAAAAAGTTTCAATCCA 24917 25 80.0 46 CTCT.C................... TTTTGTTGTTCGAGATCTTTGAGTTTTGCTAAAAGTTTCAATCCAC 24988 25 100.0 48 ......................... GTCTGGTTTGAGACTAATAAAATTGTAGATAAAGATGTTTCAATCCAC 25061 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ================================================ ================== 5 25 96.0 46 TCTCCTTTTAAAGAAGAGAAAGAAC # Left flank : GCCAAACCCATGTTAAATTATTATGAAAATGGCATCAAAAATGAGCAGTGTATTATTTGCGAAAGTGTAAAAGCTCTTATAATTTGTGTTGTTCCGTAATTTATGCTTGTTTTGTGTTAGTTCCCACATTTTAAGTTTTGAAAGAAATATTAGAATCGTATTATTTTCATGTGTCTGAGTACACTTTTTTGTTCATGTTACAAAGTGGGGATCTACCTTAAAATTGATTTTATACTAACGTGAGTTTGAACATGATTCATTTTTCTGAAAAAAGTTGAAATCTGAACTTTACAGATCGATTCCTAAAATGTGGGAACTACCACGAATCGCGGTTTTACGAACAAATTCTGATATCATACTTTTAGAGAATTTTTTCTCGGCTGAACTCATTCTTTTCAAGTTCAGAAGGGGCGCTATTTTGTCATAGAGAATTCAAACTGAAATAAATTGGGTTCTGTCGGAATTGAATACAATCTGGATTGGCTTTGGCTTGTTCTTTC # Right flank : CAGCGGCTTGATAGGTCGAAAAATTATATATTATAAAAGCTTTATTGGCTTTTATAGACATAATAATTGCGAACCTACTTTTGCCATGCTGAACAAATGCTAAGCGAAACCGTTCAATCGCCAAACAGAGAATCAATACAAGGGTGCGAAAGGTTCGTGATTGATCGGGAGAAACAGGTTCGCAAAAGCGTTTTCATTATAAATGATCGGCTTTTAAAAATCTATAATATAGTTAAAGAAAGAATAGAATTAGAAATTTATAACTATCTAAAGAGACGTAATTATAAAAACCACTGTGTTTCGTATTTTGAATTATGTTTGTTGCTAGAATATATGTTTTACTCATCCCATAAAATTGAACCTCGGTAAATGTTGTTATAAAGCGTCGGTTAGGAGAGTTCTGTATAATCCAATGTAGTATATGAGCCTGTCGAACAGTGAGACGTTTTAGTTTGAAAGAGTTTTTTGCTAAAGTTCCTATCGCATCGATCCTTTTCGTG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTCCTTTTAAAGAAGAGAAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 222562-221668 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWH02000041.1 Leptospira kirschneri str. 200802841 ctg7180000005377, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 222561 37 100.0 33 ..................................... TCAATCGCTTAATGACATAAGGTCTAAAAGATT 222491 37 100.0 35 ..................................... TCTGATGAAGAAGGTTTACCAGCAATGTCTTTAAT 222419 37 100.0 33 ..................................... CACAACAAATGCAGTCACTCAGGTAGTTATGGT 222349 37 100.0 33 ..................................... CAGTAACCAGGAGATTTACGATCAAAGGGCCGA 222279 37 100.0 35 ..................................... TCCTTGATGATTTGTTCGTTCTGCCATGCTTCAAA 222207 37 100.0 34 ..................................... TATTCAGGTGTCTGTTATTCTCATGCGAATGAAG 222136 37 100.0 37 ..................................... CTCTTACCAGCAAAGTGCAAATACTAGAAAAGTTTAC 222062 37 100.0 35 ..................................... TTCCTAAAAGTTCTTTTATGTCCGTATACATATAT 221990 37 100.0 33 ..................................... ACAAAGAAGATCCTATCAGCGACTTCTTGGATT 221920 37 100.0 35 ..................................... AGGTTATAGATACCGGAACTCAATATAATTTCCGT 221848 37 100.0 35 ..................................... TTAATAAAATTTCCCAAATTCTTTTAGCATTTTTT 221776 37 100.0 35 ..................................... TTATACGAGGCATTAATCGCTTCCAACGTAGCTTT 221704 37 97.3 0 .................T................... | ========== ====== ====== ====== ===================================== ===================================== ================== 13 37 99.8 34 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : TAATATCTTGATTTGTGAGAGTTCCCACATCACTTTACTGACAAACCTAAATTTTGTAATAGCTCCCACATTTAAATACTACAGATTCAAGTATTATAAAATTCTATTTTTTAAATTGTGAGAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCAAACTCACGTTATATTACAATGATTCAAAACCAAATATTATGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACAGGGGACTTTCGCACCCAAACGTATACACGTCGTTTGGCGATTGAATGGTTTCGCTTAACGTTTATTCAGTATGGCACATACAGATTCGCAATTATTATGTCTAGAAAATGCTATTAACCTTTTTCTTATACATTTTTGCGGGGCTTTTGAGCCGCT # Right flank : TAAATGCGTCAGCGCTGACGCATTTAGTTGGTCTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTCCTTTAACGTGAATTCGATGTAATCAATGTAAAAACAATTGAGGCGAGAACTCAGTGTTTCATAGATAGGTCTTTGTTTAGATCACGCTCTAAACTCAAACCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTGAACATTCTAAGTTTCAAATGAAAGTATGAAATTTCCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGTGCTACATTCCATTTTTGTAAAAAACGAACCTTTATAAAATTACAAATTCTAGTTACGCACATTCCACATAACGACCTTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATTGTTTTTCCTCCATTGGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 26023-26919 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWH02000020.1 Leptospira kirschneri str. 200802841 ctg7180000005345, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 26023 36 100.0 37 .................................... AGGAACCTCTCCAGAAGCAGAATGGAGGAGCCCTTCT 26096 36 100.0 34 .................................... AAGATCTATGCAGGGACCAATCTGGTATTTGTGG 26166 36 100.0 34 .................................... GTAATCGCCTATAAATTCGATTATGACATTCCCG 26236 36 100.0 35 .................................... CAAATCAGGATTAAATGCATGAGTGACTCTAACCA 26307 36 100.0 35 .................................... AGGTGCAGGAGATAGGATACTACCAACGGCCGGAA 26378 36 100.0 37 .................................... TAGTTTACCTCGCTCCATCTTCACATTCTATTCAAAA 26451 36 97.2 36 .....................C.............. ACGGTGGTGCACGCTGCGGAAAAACATATCTCGTAA 26523 36 100.0 37 .................................... AACAAGAAAAAATAAATTACGGTAATTTAATATGAAA 26596 36 100.0 37 .................................... CGCACACCTACTTAACGGCCTCCATTGGTTTGAGCGG 26669 36 100.0 35 .................................... CAATCAAAGCGGCATGGAATTCTTCTTTAGAAATT 26740 36 100.0 35 .................................... AACTCGTTGGTAGGAACTTTCGAGCCGCTTACGAA 26811 36 100.0 37 .................................... ACCAACTCAATTTGGTTGGCCTTGTGTCACTTAACGA 26884 36 91.7 0 ......................T.....C.A..... | ========== ====== ====== ====== ==================================== ===================================== ================== 13 36 99.1 36 CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : ATTGGCTAAAGTTATCGAAAAAGAAGACGACGTATTTTACCTGACTCTTTGCGCTAAATGTGCCTCCGGAGCTCACACCCAAGAGAAAAAATCGGCCTGGCCAGACGCACCAAATACTCTCAAAATTCTATAATTCAAGTATCTATTTATGGCATAGACATAATTCCCTTTTTTTAGCATCAAAATTAGCGTCTTAAGTCCAAACATAACTTCGTATTCGTCCATCTTTATAGAGATTCAGAAATAACCGCATTCTAATAGCAGTTAGTTGAAGTTATTTTCTTTCTTGCGAAAATTCTGGTCCAATTTATTATCAAATACGGATCAGAACATACTTGAATTGCTATTTCCTAATCGTAAAGGCGGATTGACTCAAAATATAATTTATTAAAGAAACTCGAAATGAAAAAAAGTTATAAAAAGCAATATTCTTGTTCACCCTCTATAATTTCCTTTGTATCGACAATCTCTACACCTAAAAGCTATAAGATTAAAATGCT # Right flank : CAAAAGGACAGAAAAATCGGCCGATGCGAAAGCGATCTCCTGCAATGCAACATGATTTCACTATAAATATTCGAATATACTGAATTTATAACATGTTGCGTTGCAGATTGAAACGGAGAGCGCGGTTTTTCTTCCCGGAGGCGAAGAAAAATTCGCCCCGCCTTTTATTTTCCGAATGACCGAAAGCTGAATAGAATTATACCGCAATTCGAATATTATAAAAATAGGAACTTCTTCTTGGAAAATCCTTCGTTTTATTTTTTGATCGAGAATGTTTTTCGACCTTGAATCAAATCGTATTTTTTAACGTTTCATGGTCGCAACCCAATGTGCAATGTTTTTGAATTCAGGATTTTCCTCGAGGGAGGAAAAATATTCTCTCGCCCATAAGAAATGAGCGCTTAAATACTCTTCCTCCTGGAGTTCCCGCAAATGTTGTAGTGCCAGTTCCGGTTGTTTGTTAATCGCAAAATATCCGGCAAGCACGAGTCTTAAACGGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 32999-33295 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWH02000010.1 Leptospira kirschneri str. 200802841 ctg7180000005343, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================= ================== 32999 24 100.0 47 ........................ AGTGGATTGAAACCCGTTGACTCGAACGTTGTCTCGATTTTCAATTT 33070 24 95.8 49 ...................T.... AGTGGATTGAAACGGGTTGGCTTTCAAACGATGAGAAAAAATCAATCAG 33143 24 100.0 47 ........................ AGTGGATTGAAACTTTGTAATTAGTGTTTAATTTTGATTCTTTATTT 33214 24 100.0 33 ........................ CTATTTTATGTGGGATCGATTCCTAAGACATGC 33271 24 79.2 0 ........T...A.....C..A.T | T [33291] ========== ====== ====== ====== ======================== ================================================= ================== 5 24 95.0 44 GTTTCTTCCTTTGTTTAAGAAGGA # Left flank : CCATGGTTCTTATTCAGAACCATACAATCAATTTCCCAGTATTTTAGGGTTTTGCAGTAAAACTTACGGCTCTCCATTTTTTAGAACTAAAGCAGAATGCTCTTTATTGGATTGGGTTCTTTTATGTAGTCATAAAGTAAGAGAAAAATTCCATACTCTATAAAATGAGTTTTTGAGACCGAATTTTTACTAAACGTTTAAATCAATCTTCTGAAAATTCATTCCTAGATATCCATCTACTTAGACTTAAAACTAAAGAATTTATAGTTTATATTCTTGACTTTAAAAAGCGGACCATTTTATGATGAAGCGCTTTTTGCGAACCTGTTTCTCCCGATCAATTGCGGCCCATTCGCACTCAAACGAATAACCACCGTTTAGCGATTGAACAGTTTTGCTTAACGTTTATACAGTATGGCGTCAGTAGGTTCGCGATAATTATGTCTAGAGAAACTAATAAATCTTTTCCTAATACATCAATTAGAGACTGTGCAGCCGCT # Right flank : TTCGATTTAGAACTTTCTGAATTTATCTATAAAAATCACAGATTGTATAAATTCCGATATTCAGCTTTTTATGATAAACTTCAGGTTTATAAAATGAATTGATTCAACCCAAGTTCTTTAAAACTACAGCAAATCTTTATTTAAGGAAAGGATACAAAAGACCGAAAACGGCAAAATCTCTAGACTTTCTTCTTCTTGGAAAACAATTGTTAATTAATATTTTAGAGAATTATAATATACTTGATTAGAATTTCTAGAAATTTTTATTTTACCGCTCTATACTCAAAACGTACCACAACTCAATTTTCTCCAGTTAACTTACAGGTGTCTCAAAACCAAATCGCACTTTATCAGAAAGATCAATCTGAATAACGAAAGTGCCTCACTTCTATTGACGCTCGACAGATTCTTATTATATTAAATCACGTTATCGCAAGGTTTTATTCTTTACCTTGAAAGAAAATAATTTAAAATAAACGAACATGAAATTTTTTATCAGC # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 35759-35503 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWH02000016.1 Leptospira kirschneri str. 200802841 ctg7180000005399, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 35758 37 100.0 36 ..................................... CTCTACAGGGTTTGAGTTCTGGGACTGAATATTATT 35685 37 100.0 36 ..................................... CTGAATAAATTGCACATATTCAGAATTTTTTTTTTC 35612 37 100.0 35 ..................................... TAGGAATCATTTTGAGAGCGGGGACGCGACGGAAA 35540 36 81.1 0 .............G...G..G....C....A.-...G | TT [35512] ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 95.3 36 GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Left flank : TTATAGAGAATTTTACTAGGTTGTTTCAAAACTAAAAACTTCGCGAATGTTTACCGACGAGTCAGTCTATTTTGCTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGGCCTAAAAAACATTTTTTTAAAATTTTGATTTGAGATAATTTCTAAAGAATTCTTCCGTTTCTTTTCTGAAAATTTCAGTTAGGTGAACATTGACTCATTTATAGTTTTAAATCTATTTTTCCTGGAATCCTATTATAAGTTTTTGCCTTTGATTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATCAATTGTGGATCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATGGAATAGATTAGCTTAACAATTGTACAGTATGGTGAAAATAGGTTCGCGATTATTATGTCTAGAAAGCTTAATAAAGTATTTTATAATACATTATTTTCAGTCCTATCAAGCCGCT # Right flank : TGTTTAAAATTTTGTTCCTGAAACGGAGATTCTTTTCAAAAGTTATGATACTCTAATATATGAGAAATGACTAATCGATAGGGATTGATTGCTCGGAACAATGATTTCTAAGTTTTGTGAGAGTTCCCACAATTTTAAAAAATTGGAATGTTTTGTATATCAAACACTACAGGTTTTTATTTAACATAAATTCGAAATAATAGAAATTAGGAAAAATCTATTCTAAGAATAGGAGTTCCTTTTTATTTTTACGGACTCAAGTTTCTCTTTCGGAGAATGCCTGGTTTGGTAAATTCTACCGTGAAAATTGAGTATTCGTGGTGGTAGTTCCCACAGATTAAGTCTCTTTGTGAAGTTTATAGATTTATAAATCGTATTTTCATTGTTAAATTCAGTGGTAGTTCCCACAAATTAAATCACATTGTGAATGTATAGGTTTTAAATGCATTTTAACGTGAGTTCGACGTCATAAAATCGGGGCGAATCCGGCTGCGCTTTCG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 87993-88671 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWH02000016.1 Leptospira kirschneri str. 200802841 ctg7180000005399, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 87993 37 97.3 33 ....T................................ AGTATTCACAAAATCAGAAAATGGCGACTCAAC 88063 37 97.3 34 ................G.................... CTCTGGATACATTGCAGATTCGTCCAACGCCATA 88134 37 100.0 36 ..................................... TTTTTGGATCTCTAATAATCTCAGTTTTTAATTCCT 88207 37 97.3 34 ................G.................... AATGACTGGGCGGCGAAGTTATCAAACGTGTTTA 88278 37 97.3 34 ................G.................... TGTCACCCATGTCCATGCGGAAACCGCCGCCGTT 88349 37 100.0 35 ..................................... AAGAAACGAAAATGGCATTGGTTGAAAACCACCCT 88421 37 97.3 34 ................G.................... TTCCGCGTAATCGCTTGATATATAACGTCGTAAC 88492 37 100.0 34 ..................................... TTCCGCGTAATCGCTTGATATATAACGTCGTAAC 88563 37 100.0 35 ..................................... TGTAACCATAACTCTGCTCCTCAGTCCCAACCCGA 88635 36 86.5 0 ...........................T.-.CA...A | G [88660] ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 97.3 34 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TAGAAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTAGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATATTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATCTTTGCATAAATTAAGCGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAGGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATCCTTTGCGGCCGGTTCGCGTTTAAACCTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAAAGCTTTTTCTAATCCATAAATTTGCACCTTTTCGGCCGCT # Right flank : AAACGATTTATTTAAAAAAAAATTTTATTTTAGGTTTTAAGGCGACCTCTTTATAAAAGTTTTCTCTTAAAGAGAAATCCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTTAATAAACCATTGTTAAACTTTACAACAAAGTACGACTATGAGAGGTAGTTTGTGGGAACTCATACAATCTGATTACTGTGATGTAGGTTTATTTCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTGAGTACCGTTAATTTTATCGCAAAACACTGATTGCATGCAAAATATTAGGTACTTTATTGATAGTTATGAGTGATAATTATATAATAGAGTTGTTGAAAATTAATTCTCCATCTGTTTTCTATTTCATAGAAACG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //