Array 1 148-1092 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSXH010000329.1 Actinocrinis puniceicyclus strain DSM 45618 NODE_329_length_1238_cov_8.79928, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 148 30 100.0 31 .............................. TGCGCGAGACCGGTGACCGCAAGTCGACGGT 209 30 96.7 31 .............................T CGGGCAAGACGCCTCGCAGGCCGTCACCGAC 270 30 100.0 31 .............................. ACAGATGGTCGCGACGATCTACGGTGCAGCG 331 30 100.0 31 .............................. AAGATCAAGGACAAGGTCAAGGACCCGATCG 392 30 96.7 31 .............................G GCAGGTTCTTCTCCGCCCGGACCTTCCACTC 453 30 96.7 31 .............................T CCGCCGCGTTCGCCGCGATCCGCCATGTTCA 514 30 100.0 31 .............................. CCGACCTGGACGACGTACTGACCCCCACCGC 575 30 96.7 31 .............................G GGTAGAACGGGCTCGCCGTGTTCGTGGGGTC 636 30 93.3 31 ............................TG GTGAACCATTGCCGTGCGCAGTCCCCTGCGA 697 30 96.7 31 .............................A CCTGGTGGCAGCAGATCAGGGCGTGTTTCCA 758 30 100.0 31 .............................. GGGCGGCCTGCTCGGCTACACCCGGACCTGA 819 30 96.7 31 .............................G CGGGTGTTCGTGCCGACGTGCAGCAGTTCGC 880 30 100.0 31 .............................. GACCACTACAGAACGCCTCACCGCCCGCGGA 941 30 96.7 31 .............................G GCGTCTACCGTGCGGCCCGCGATTTCGGCCG 1002 30 96.7 31 .............................G GCCTGTCCGTCGCACCGAACCCGGACGACTA 1063 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 16 30 97.9 31 CTCGTCCCCGCGCTCGCGGGGGTCGTCCCC # Left flank : AGTACGAGGACCAGATCCTGCCCACCGGCGGCTTCACCGGCACCCCGGAAGAAGCGCTGGATTGCGCCTGCGAGCTCTACCTCGATGCTCCCGACTTCTGACAGATTTCAAGCACCCCCGAAGGACTTCCGGGCGCGACCACTAAGTC # Right flank : CCCGGAGCCGATTGACTTTGGGTGCGGCTCCTTGAGGGTGCGTGTTCGAGGTCTGTGATCTCGGGCGATTGCACGCTGCTGATCGTCACAGAGGGCTCCTTTCCGCTACGTTCCTGCTTGCTGACGGCAAGAAACGAGGGAAAGGA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCGCTCGCGGGGGTCGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10143-12001 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSXH010000038.1 Actinocrinis puniceicyclus strain DSM 45618 NODE_38_length_50601_cov_12.7263, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10143 29 100.0 32 ............................. ATCGCGAACCCGGTCTACCGGCAACTGCCGCT 10204 29 100.0 32 ............................. GGCACCGCGCGCAAGCTGTGGCGCCGCACCAA 10265 29 100.0 32 ............................. TCGGCCAGCGCGAGATACCGTGCCGTATTACA 10326 29 100.0 32 ............................. GCGTATTGGAGCGGGTCCGGGACGACTTGGCT 10387 29 100.0 32 ............................. CCCGACCACACCAGTGCCGCGGCGAGCGCGGT 10448 29 100.0 32 ............................. GGGATCGCGGCGTTCGTTCAGCTCACGATCAA 10509 29 100.0 32 ............................. CCATGGCCGCGTTCGTCGAGGCGCGCCTCGAC 10570 29 100.0 32 ............................. ACCTCGACGCGATCCTCGACGGCGGACTGCGC 10631 29 100.0 32 ............................. ACCTCGCCGACCCGCAGTCGCACCGCGCGGGC 10692 29 100.0 32 ............................. TCGCCAGCGGCAGCGCGAGATCCGGCGCCCAC 10753 29 100.0 32 ............................. GCGTTTAGGCGCTGGGTGACGCATGAGGTGCT 10814 29 100.0 32 ............................. GACGTGTGGGTCGAGATCGGCCACCCCGTCTA 10875 29 100.0 32 ............................. CGGTAGGTGTGCCGGCCCGGGACCTGCGCGAC 10936 29 100.0 32 ............................. TGGAGGTGAACGCCTCAATGATGCAGACCCCT 10997 29 100.0 32 ............................. TACTTCCACGGTTCAGTACCGTCCCCCAGGAG 11058 29 100.0 32 ............................. TTGCCAAGCGTCGCACAGCCGCTAAGCGCGTG 11119 29 100.0 32 ............................. GCGGGAGTTCCGGGCCGGTCTCTTCGGGGGCC 11180 29 100.0 32 ............................. CTCTTCGATGGCGATCTGCCCGTCAGCGCGCT 11241 29 100.0 32 ............................. ACGACCGGCAAGCCGAAGGTCGCGGCGCAGGG 11302 29 100.0 32 ............................. TCCGCCATCGCGCGGCGGACCGCGAGAAGTTC 11363 29 100.0 32 ............................. GAGCGCTGCGACACCCTGGTACGCCAAGCCCA 11424 29 100.0 32 ............................. CCGGTGGCGTTGCCTGGTCGGTGCTCGGCACT 11485 29 100.0 32 ............................. TATCGGGGTGTCGGTGGGATGAGTTTCCTGGT 11546 29 100.0 32 ............................. TTTTGACCAGCGAGTGGAACACGGACAGGTCC 11607 29 100.0 32 ............................. GTTGGTCCACGCACCCACATGCGGCCTGCGCA 11668 29 100.0 32 ............................. GATGCAAAAGCCGCGCGTGCGCAGCGTGAAGC 11729 29 100.0 32 ............................. GTTGATCTATGGCCAAGGTGACCGTGTCCGAC 11790 29 100.0 32 ............................. GACCGTCAGCTGCGCCAGGGCGTGCTCGCCCA 11851 29 96.6 32 ............................C ACGGCATGTTCAGCGAGAAAGCGACCGCGTTG 11912 29 100.0 32 ............................. CAGGCGTAGCGGCTGATTGCGTCAAACACCGC 11973 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 CCGTTCTCCGCGCAGGCGGAGGTGATCCG # Left flank : GCGTCGCACAGCTAAAGCCCGGCGACCTGCTGTTCATCCCCGGCTCCGACGGAACACCACAGGCGCCCGGACACGTCGGCATGTACCTCGGCGGCGGCACCCTGATCCAGGCGCCCCAATCCGGTCAGACCGTCCAGCTCAGCCCCCTGCGTCAGTGGGCGGACTCGCTCGCCGCGATTCGCCGCATCAGCTGAGTAGCCGAGAGCTCCTCTGAATACGTCCTGACGCCGCGCCGCCATCCCGCACTTGCGGCGCACCGCTACCGCGTGATGAGAGCAGTCACCGAAGAGCCCACCACAGAGATGAGATCCGCTTGTGGCGCTCGGCCGTTGGGCACTCTCAGGAAGCCGTAGTTAGACACGGTATGTACGAGCAGGCTTCGTGTCGGGTCGACCGCCACCGTGATGTGCACCTCGACTAAACTCGCTCCCATGCGGGCGCCGAGTACCGAGGTACATCACGAATCTGCAACGGCCTGAGAAGAGCGCAGGTCGCGAAGC # Right flank : GGAGTGGGCAATCTGCGCGGGCCCGGCAGCACCGATCGCGAGACGTGAACCACATACAGATGTCTTGTGACGATCGGCTGAGGAGTCGTAATTTCCGTTAATTCGCCACGGGCATCGTGAGGGCAGGCTACGCTGGGTCGCTCTATCAGGTGCCGTCGGTTATGACAGGGCATTTATTACTGGCATGATGATTGAGAGGCGAAAGGAGATTTGGTGGGCGGCGCTCGAGCAGTGGAATCTGCGGACGATGAGGCCGGGAGTCGGGGCGACTTGGAAGTCGACGTTCGACTGTGGGGTAAGAGTGCTGATCAGGGATTGGCGCGGCCGTATCCGCTGATCTGTCATCTGCTCGATACCGCGGCGGTGGCGGGTGCCCTGCTCGATCTTACCGTCGGGCCTGAGCGCACGGCGCAGATGGCACGGACCGCGGGACTCGCCGGTGGTGACTTCAGGGCCCTGGTGATGTATTGGTCCGGGCTGCACGATCTGGGGAAGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCTCCGCGCAGGCGGAGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21472-23999 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSXH010000038.1 Actinocrinis puniceicyclus strain DSM 45618 NODE_38_length_50601_cov_12.7263, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21472 29 100.0 32 ............................. CCCAACACCCCGGTCGTGTTCACCAACCCCGC 21533 29 100.0 32 ............................. TACGGCACCGCGTCCCGGGCCATGGCCGTCGT 21594 29 100.0 32 ............................. CTTTACGGCCCGGACGTCTACTAGACGCTGAG 21655 29 100.0 32 ............................. CTGGCCTTCTCGACCAGCTTCTTGGCCTGAGA 21716 29 100.0 32 ............................. ACCGCGTACGAGGTCGCGTCCGACCTCGCGCA 21777 29 100.0 32 ............................. TGCTGCCACCAGCTCGCCGGGGCCTCGAACCG 21838 29 100.0 32 ............................. CGCTACGACTCGCCCACGCGGCCGGGGACCGG 21899 29 100.0 32 ............................. GTGGAGCGCGCCAACCGCAACAGCGGCGGCCA 21960 29 100.0 32 ............................. CCGACAACGGGCCGACATCCACACCCGTCGGC 22021 29 100.0 32 ............................. ACCGCTGACATCCGATCGCACACCTTTCCGAA 22082 29 100.0 32 ............................. GTCAGCGCGGTCATCTGCCCGCGGGATCAGGT 22143 29 100.0 32 ............................. CGGGCAGTGATGGGCACCCACTACCCGCCCGG 22204 29 100.0 32 ............................. GTTCCAACACCTTGAATTCCTGCTCTATCTCG 22265 29 100.0 32 ............................. CACGGTTCCGGCGCCGGAACCGACGGTTTCAC 22326 29 96.6 32 .........A................... CTCTCCCAATCGTTTAAACGGCTTGTGAGCGC 22387 29 100.0 32 ............................. ACAGATGGGTCCGCCGGTCCGGTTAAGGCAAA 22448 29 100.0 32 ............................. ACACGGTTTGAGGCTCTGATCTCCGCTATTCA 22509 29 100.0 32 ............................. CGAGCGCCACGCTCGACAGCACCGGATCGGCC 22570 29 100.0 32 ............................. CCGAAGGTAGAGCGTACCGGCCGTGCGAATTG 22631 29 100.0 32 ............................. CGGCACGAACACGGACCCCACGGTCCTGTTCC 22692 29 100.0 32 ............................. TGGGCGGCCGACCCGCGCTGCCGGGTGAGTTA 22753 29 100.0 32 ............................. GTCTGATCGTCGCGCCGGACGTAGGTCGCTGC 22814 29 100.0 32 ............................. TTGCGGGTCTCGCCGACCACCGTGAACCCGTT 22875 29 100.0 32 ............................. TACGAGATTCCGGCGGTGACCAGGGCGATTGC 22936 29 100.0 32 ............................. GGTGTCGGTGTTTTCTTCATCTCGCAGAGTGC 22997 29 100.0 32 ............................. GGCCGTGAAGAAACTCGACTGGTCGGCGGTGA 23058 29 100.0 32 ............................. GCTCCGAGCGCTCCCCCGCCGGCCGCGCCTGC 23119 29 100.0 32 ............................. TGATGTTCGCGAGCCCGCCCGTGGTCGCCGGC 23180 29 100.0 32 ............................. GCCGGGTGCAAGCCCGGCGGCGTGGTCCTAGA 23241 29 100.0 32 ............................. CGCGCAAGCTGATGCGGCTTGTCTATTCGATC 23302 29 100.0 32 ............................. TCGAGCGGCTCGCGCAACTCGCCGCAGGGGTG 23363 29 100.0 32 ............................. GAATCGATGGCGGCGCGCCACCGGACGTGGGG 23424 29 100.0 32 ............................. GCTTCGGCCGCGACGTACGCAACTGGATCGCC 23485 29 100.0 32 ............................. CCGTGCGCTACGAGATCGGCGCGTCCGGCCGC 23546 29 100.0 32 ............................. ACGGCGCTCGGGCAGGTCAGGGACGCGGGTAT 23607 29 100.0 32 ............................. ACGGCGCTCGGGCAGGTCAGGGACGCGGGTAT 23668 29 100.0 32 ............................. GGTCTGACGTTCTCGCCGCCCGCCAACCAGGA 23729 27 93.1 32 ........--................... CTGCGGTTGTGGTCCGCCCTCGGTACGACCCT 23788 29 100.0 32 ............................. CCGCGCAGCTCGAGCCGCGCCAGGATGTCGGC 23849 29 96.6 32 ...........A................. ACCGAAGAGCACCCCTCACCGGGGCAGGCCAC 23910 29 96.6 32 .........................G... GGCGCCGCGGCCACCGTCACCGGCAGCGACGG 23971 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.6 32 CCGTTCTCCGCGCAGGCGGAGGTGATCCG # Left flank : CGTATCGTGCGCGACATCCAAACACTCCTCGACCCGACCCAGGCCGATCCGCAACAGGCGGAAGATGGGCCGGAACTCGACGATGTGCAAGTTGTACACCTGTGGGACCCCGCCGCGGGAACCGTGCCGGGTGGCGTCAACTACGCCGCGGGTGAGGACACGCCGTGGCTAGCCTGACCGTGATCAGCACCACGGCGGTCCCTCCGCACGTACGCGGAGCGTTGAGCAGATGGATGATCGAACCGACTCCGGGCCTTTATGTCGGAACTCTGTCGAAGAAGGTCCGCGACGAACTGTGGGCAGTTGTGGCGGCCTCCGTGCAGGACGGGGCAGCCGTGCTGATTCAGCCGGCCGACAACGAACAGCGTTTCGCCATCGCCACTGCCGGAGAACGCCGCCGAACCCCGATCGATCTCGACGGCCTGACGCTGATCGCGCTCAACCCCGCCGAACCGGATAACGAATCGGCAACGTCCGTATAATCGCGCTGGTCAGCAAGA # Right flank : GCTGCGCTCCTATCTCTGTCGACGACTAGTGAAAACTGACCCCCAGGCAAACCCAGGCGCCCGGCCACTTCGGCCTGTACCTCGGCAACGGCACCCTGATCCACGCATCCCAAACCGGCCGGGCCGTCCGCCTCAGCCCCCTGAGCCGTTGGGTGGGTTCGCTCGCCGCCATCCGCCGGATCATCTGAGAAGCCTGAGCGCTTTGGTGATCGCTGTCTTGTACGGCGCGGGCATCGTCAACCCGGAGACCTCCTGTGGGGCAAACAGACCCAGCTCCTTGTGTTCTCGGGAGTAGCGTGGCTTCTCGTCGCCGGTGTACCGGGTGGCGTAGGCGACCACGAAGACGTGCCGGTCGGGCGTGATCTCGTAGACCCAAGCATGTGCGATGTGCAGATCCTGTAGGCCGAGTCCGAGTTCTTCGCGGGCCTCGCGCCGGGCGGTGTCTTCCGGGCTTTCGCCGAGGTCGAGTTTGCCGCCGGGCAGTTCCCATTCGTCGCGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCTCCGCGCAGGCGGAGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9642-4275 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSXH010000094.1 Actinocrinis puniceicyclus strain DSM 45618 NODE_94_length_23115_cov_12.0203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 9641 30 96.7 31 .............................T GATCGCGGGCCGGTGTTGCCACGGTCTGTGT 9580 30 96.7 31 .............................A CCAGGAACCCCGGCGGTGTCGGGCCACCGTC 9519 30 96.7 31 .............................G GGATGCCGTTCCTGATCGCGAAGGGCGCGGG 9458 30 96.7 31 .............................T GGTGGCGGGCTACGTGGACGGCCTCTACGCG 9397 30 100.0 31 .............................. AGCGCGGTGCCGGTGTCCACGATGGACGTGG 9336 30 96.7 31 .............................G CTGACCGCGGTTTTGGACGAGCCGCCGGTAG 9275 30 96.7 31 .............................G CGCCGCACAGTAACCGAATCGATACCTGCCC 9214 30 96.7 31 .............................A CCACCAGCACCGTGTCGGAGGTGCCGCCGCC 9153 30 96.7 31 .............................A TCACGGTCAAGGCGGTCTCGCCCTGATGCCC 9092 30 96.7 31 .............................T GGTGCCAGTCGATCCGGCCCGGCGCGTGAGC 9031 30 96.7 31 .............................G CGTCGATCAGGCCCTCGAAGTCGTCGGCCGT 8970 30 96.7 31 .............................G AAGCCGCCGCGGCGATCCGCAACGACAAATA 8909 30 100.0 31 .............................. GCAGGCACGGCGCAACCTGATCCTCGGCGTC 8848 30 100.0 31 .............................. GTCCGTGATCAGCAACGCAAGGAGCCCGAGA 8787 30 96.7 31 .............................T TGTCTTCGGCTGGGGCGGCGCGGTGCTCGCC 8726 30 96.7 31 .............................G GCCGCTCGAGCAGCGCTTCATCGATCGGCGG 8665 30 96.7 31 .............................T CAAGCTCAGCCAGCAGCTGCGCCGTGGTGTG 8604 30 96.7 31 .............................T GGCGCAGCTCGCCGAGATCCTGGCCGCGGAC 8543 30 100.0 31 .............................. CGCGCCGACCTCCAGGCGTGGCGCACCCGCG 8482 30 96.7 31 .............................A GGCCGCACAGGTCGTGGTGCACCGCCGGGGC 8421 30 96.7 31 .............................G ACCCGACCCGCTCCCTGATGCTGCTCGGGTA 8360 30 100.0 31 .............................. GATCGCCCACAGTGCGGCGACGGCGAGCCAC 8299 30 96.7 31 ............................T. TGGGTGCGCGGCGACCGAACTTCCGGGTGGA 8238 30 100.0 31 .............................. ACGGCCCCGGAGCGTGGACCGTGCGCGTGGA 8177 30 96.7 31 .............................A TGCCGGCGCCGCTGTCGCCGATGCCGGAGCG 8116 30 96.7 32 ............................A. CGCACCCCTCGCAGCCGGAGGCCACCGCGGTC 8054 30 100.0 31 .............................. CGACGTGGAAGATCGAGGTCGGCCTGTTCAG 7993 30 100.0 31 .............................. GCCGCTCGGGCTTTCCGCCCCGGCTTCGTGG 7932 30 100.0 31 .............................. GTCGTCGTCGCTGCTGTCGCCGCGCTCCACG 7871 30 96.7 31 .............................T CCAGGTCGAGACCCTCACCGCCGCGTCCGCG 7810 30 100.0 31 .............................. ATCACGGGGAGTTACCGCCTACGGCGTATAT 7749 30 96.7 31 .............................G GCCGTTCTCCCATGCGCTCACGGATGCCCGG 7688 30 100.0 31 .............................. GGTCGGCGACCGCTTCGGCGAGCGCGGGAAG 7627 30 100.0 31 .............................. ACGCCGCCTGGCAGCGACAGCGAGCGGCCAC 7566 30 96.7 31 .............................A GACACCTCCCGGTGCGCTGGCTACGCGTACT 7505 30 96.7 31 .............................T ACGTCAAGTGGGACAGCGAGGGCCACGGCTA 7444 30 100.0 31 .............................. GCGCAGGTCACAGCGTTTCGGCGACCCGTAA 7383 30 100.0 31 .............................. TGCGCCGCTCCCTGGAGCCCAGCGACCTGCG 7322 30 100.0 31 .............................. CGGTTTTGCCGTCGCTCGCGATGGAGACGAC 7261 30 100.0 31 .............................. GTGTCCCGCGCCGGTTCCGCCGGCCCAGTCT 7200 30 96.7 31 .............................G AGACCGAGGCCCCGGCCGAGACCGGCGACAG 7139 30 96.7 31 .............................A GCGACGGCGTCACGTTCGCGTCCCCCGCGTA 7078 30 100.0 31 .............................. AGTGGCAGATCGGCGCGGCCACGTGGACCCC 7017 30 96.7 31 ............................G. ATCGGGTCATAGGCAATCGGGCCGGTATGCG 6956 30 100.0 31 .............................. TGCTGCTCGCGGGGCGTGAGCCAGTCGTTGG 6895 30 96.7 31 .............................T CGATCATTCGCGTGTGCTCGTCGCATCGACG 6834 30 96.7 31 .............................T TCGGCGACTTCGGCTCGCCGAACATCCTGAC 6773 30 96.7 31 .............................G GCGGTCACCGCGCACTGGGGGACTGCCTCGC 6712 30 96.7 31 .............................T CTCTGACACGTAGTGGCGACTTGTGAGCACT 6651 30 96.7 31 .............................G AGATGCTGACGCTGCGTACCATCGGCGCCAC 6590 30 96.7 31 ............................G. TCTTGGCGGCGACCGGCCGGGCCCGTGATCT 6529 30 100.0 31 .............................. TGGAGAGTGGGGCCATGACCCCCGAGACGCG 6468 30 96.7 31 .............................A CGTCGATGAAACCCTCAGTGAGCAGCGGGTA 6407 30 100.0 31 .............................. CGCAGGCCATCGGCCGCGGCGCGATCTCCAG 6346 30 100.0 31 .............................. CCCGCCGACCGGCGGGGGTGTGCCCGGCCCA 6285 30 96.7 31 .............................T CCTGCGGGGTCAGCGGGTCGTGGTCGAGCCG 6224 30 96.7 31 .............................T GGCCGCGCAGGCCCGCCAGATCCCGCCACCA 6163 30 96.7 31 .............................G TGTTCGCCGCGGCCGGCGGCGCGGTGACGTT 6102 30 96.7 31 .............................T CGACGAACGCGGGCTCCACCGGCGGCCTCGC 6041 30 96.7 31 .............................G CCGCATCCGGCGATGACGATTGGTCCGAGCA 5980 30 96.7 31 .............................T GACGGCAGCGTGGTCCGGGTCACCGTCAAGC 5919 30 96.7 31 .............................G TGCCCGTGACCCATCCCGCATTAAGGGTCGG 5858 30 96.7 31 .............................G GTGTGTCCTGCATCGGTGTGGGGAAGTCGCC 5797 30 96.7 31 .............................A TGGCGTAGTTGTCGCCGCTGTAGTACGGATC 5736 30 96.7 31 .............................T GCAACTCGCCGAAGCCGCCCGCAAGCGCCGC 5675 30 96.7 31 .............................T GCAACTCGCCGAAGCCGCCCGCAAGCGCCGC 5614 30 100.0 31 .............................. CGAAGGAGCCTGATGATGACCATCGCTACGA 5553 30 96.7 31 .............................T GCTCACCTCCCCGCACGCGACCCTGCGCGGC 5492 30 96.7 31 .............................G CGAACCACTTGCCGTCCTCGTTCTGCCAGCA 5431 30 96.7 31 .............................T ACCCGCGGATCCTGCAACGCACCATCAACCC 5370 30 100.0 31 .............................. TGATCACCCTCAACGCGCCGGCCGACGCGAA 5309 30 96.7 31 ............................T. AGGGTGCGGGCCCCTGCGACCACGTACGCGG 5248 30 96.7 31 .............................A GAGGCGCGCCGTTCCCCGTGCGGAGGGGACG 5187 30 96.7 31 .............................A CCGCGAAGAAGCGGTGGCGTCACATCGTTGA 5126 30 96.7 31 .............................G GCGGATCGTGCCGCTCGGCGATCTGCGCGAG 5065 30 100.0 31 .............................. GGTCGAAGGCGAGATGGTTGATGCCGCGTAG 5004 30 96.7 31 .............................G ACGATCTGACCATCCGAGCCCAGCGGGATGC 4943 30 100.0 31 .............................. GACATGCACGGGGGTGGACTCACCGAGGCGA 4882 30 96.7 31 .............................T CGCCGACGTGGCGTTGACGGCGTTGTGTGCG 4821 30 100.0 31 .............................. CCGATGCGGAGTCCGCGTGGATCGTGCGCGT 4760 30 96.7 31 .............................G CGCCGGGCAGGCCGGGCCCGTGCTTGCGGAT 4699 30 96.7 31 .............................A CGCACGACCTGGCGGTGAGCACGGCGCAGCG 4638 30 100.0 31 .............................. GGGGCGGCTGTTGTGGCTCTCCACCATGTGA 4577 30 96.7 31 .............................G GGAGGTCAGTGAATGGGAGAGTGTGCGGCTC 4516 30 96.7 31 .............................A CGTCCGTGGCATCCCACCGGCCCAACGGCCG 4454 29 96.7 0 .............................- - Deletion [4426] 4426 30 83.3 31 ..G.G.G.G....................T CGCGGCGCGAGAGCCGGTGACCGCATGACAG 4365 30 100.0 31 .............................. GGATCAGCCCCGCCGGGTCGGCCGGGACCGT 4304 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ================================ ================== 89 30 97.6 31 CTCGTCCCCGCGCTCGCGGGGGTCGTCCCC # Left flank : CAGTCGTGGACGCCGCACAGCCACGTGAAGAACCGCAAACCGTCGCCGCCGCCCAGCCCATTAAGCAGAACCTTGAGTTTCTCGGCGAGCATCCCGTGCCAGATCTGCTCCGCGACCGCAGCCGTGTCGAGCATGTGCGACAGGAGCAGGTTCAACGTCCCGCCAGCACGTCCCGCAGACTTTCCCCACAGGACACCGAGCTGGGCAACCGACTCGTCCCCATAACCCATCTGCGCGGCGAGGGCGGCGAGGCTCACACCATCAACGTTTGACTCAAGCGGAGCGTCCTCGACAGCTGACATACCTTCCCCATCCCAACACAGGCTGACCCATCTCTCGCCTTGGTGAATAATTCCAACGCCAAAGCGATGCACGACACTACAGACGAGCATTGACAGGCGAGGGAAGTCGGCCAACGCGTGACCCAGTCGATACACTGTGGGCAACTCGGAGTGAAGGAGAATCGCCCTAACGAGCAGTAACATCGCAGGTCAACGAGT # Right flank : CGCTGCAGCGCGCAGCCGAACCGGGGTCGGATGTTCTCCGCTGACGTACCGCTATCGGACAAAGACGATCTGGCGCCATTGGTCGTCCGGCGCCCTGCGCAGGCCCGAGCTCACCTGCGCCGCACCCGGCAGCGCCTGGGTAGGCGTCACCGCGCTCCCGTCCGCCTCGCCGGCCGCGCTGCCCCGTATCCTGCCCGTCTGGCATCCGACGCGCCTTAACGTCCACTACCAGCCCGCGTTGCGGCTGGCAGAACTCGTCTTGCGCGGTGGTTCGTTCGAACCAGAGCCCGGCACCATACGCCTGGACGGCTTCCTAATGGACATGAACCGGGTCTTCGAGGACTTCGTCACCGGCGCACTCGGTGATGCGTTGCGCAGATACGGTGGCCGCGTACAACCGCAGGACACGCGGCATCACCTCGATACCGGCAAGCAGATCGGGCTGCGGCCGGACCTGGTCTGGTACACGAACGACCGCAAGGCGATCGGCGTGGCTGACG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCGCTCGCGGGGGTCGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19335-22964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSXH010000094.1 Actinocrinis puniceicyclus strain DSM 45618 NODE_94_length_23115_cov_12.0203, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 19335 30 96.7 31 .............................G TGTTGAGCAGCACCAGGCCCGAAGGCCCCAT 19396 30 96.7 31 .............................A CGCGGTGGAAGCGTTCGGGCACTGCTGGCCG 19457 30 96.7 31 .............................G GGTTCGGCTGGCTGTTGTTGACGTTGATCAG 19518 30 96.7 31 .............................G GTAGACAAGGGCGAGGCCACAGCGGAAACCA 19579 30 100.0 31 .............................. GGGAGGCGTACATCCTGCCGCGGCTGGACGG 19640 30 100.0 31 .............................. CTTCGCACTGTCTGCCGGAATCCGCCATGGA 19701 30 100.0 31 .............................. TGGTCGATCGATCCTCGCGCCCAACCCAGCG 19762 30 100.0 31 .............................. AGGCGCGGGAACTGGACTCGGAGGCGTTCGA 19823 30 100.0 31 .............................. GTCCTTGGCCACCGTCGCCGCCTCGAGCGAG 19884 30 96.7 31 .............................T GCGGTATGTCGAGCAGGGGCTCCAAGCCCGC 19945 30 100.0 31 .............................. GAGGGTCTCGGTCGCGTTGCCTTGTCCGTCT 20006 30 96.7 31 .............................G TGGTGATGGCAAACGACCAGCTGCAAGGGTT 20067 30 96.7 31 .............................T GACCGAAGGGGAGCTCTACGCCTACCGGGCA 20128 30 93.3 31 ............................GT AGGGGCGCGCGGCCCGGTCGATGCTGAGGAA 20189 30 100.0 31 .............................. AGCGCCTCCTCAAGGCGCGCGATCTCCTCGC 20250 30 100.0 31 .............................. CGTACCTGTCCACGCAGGGCGCCGCACAGTT 20311 30 96.7 31 .............................G TCCCGCTGATCAACCTCGACAGCCTGTTCGG 20372 30 100.0 31 .............................. ACGGCATACACGCCATCACATACCCCGCGTG 20433 30 100.0 31 .............................. CGACCCCGACATCCGGGTGGCCCACTTCGAA 20494 30 96.7 31 ............................T. GAGATGACGATCGCGGGCGCCGGGTACGTGG 20555 30 96.7 31 .............................A CAGCCCCCGCGCAGGCGCGCGCGTTCTAGGA 20616 30 100.0 31 .............................. AAGATCAAGGACAAGGTCAAGGACCCGATCG 20677 30 96.7 31 .............................G CCCCGTCCACGGGCGAACTGGTCATGATGGG 20738 30 96.7 31 .............................A CCAAGGCGCCCGACTACGAGGACGAGCTAGA 20799 30 100.0 31 .............................. TGCACGGGCTGCTCTCCGCGATCCTGCAGAG 20860 30 96.7 31 .............................G AGGACGGCAAGTGGTTCGCGTTCCGCGACGA 20921 30 100.0 31 .............................. GCGCCATCCGCGCCGGGTTGACGGTCGACGG 20982 30 96.7 31 .............................T CTCATTCGAGGACTACGAGACGCTGCTGGGC 21043 30 93.3 31 ............................TG ACTGACGTGGTGTCTGACCCGCAGTTCCCGG 21104 30 100.0 31 .............................. AGGCGCTGACCGAGAAGCTCGACGAGGCGCT 21165 30 96.7 31 .............................G GGGTGTTGACCGGGATCAGGCTGATCAGGTC 21226 30 96.7 31 .............................G TGACCGTGGCGAGCAGCCTGCGCAGCCGCAT 21287 30 96.7 31 .............................T CGGCGGCGTCGATCAGCAGTTGCGGGTAGCC 21348 30 96.7 31 .............................A GAGGCTCGCCTACGCGAAGGTCCGCGACCGC 21409 30 100.0 31 .............................. TTAGAGTTTCCAAAACATCACGCCGTGTCAC 21470 30 96.7 31 .............................G ACGATGCCATGGTGATGTTGGACGCGGCCGC 21531 30 100.0 31 .............................. AAAGGGTGACGATGACTGAGCCGGGTGTGTT 21592 30 96.7 31 .............................G ACCCCAAGCAGGCCGAGCGCAACGCCGACGA 21653 30 96.7 31 .............................G CCCGGCATGACGCAGGGCGCCGCGTCGGACG 21714 30 96.7 31 .............................T CGCGGGCGTCCTGCTCGTCGTCGCAGCCTTT 21775 30 96.7 31 .............................G AGAATCCGGCCGGCATGGTGATGCCGGTACT 21836 30 96.7 31 .............................A CACCCTGCCCTACACGCGCGTCAACCACGGC 21897 30 96.7 31 .............................G CGCCCGCCGCGTCGAGGACCTGCTGCCGATG 21958 30 96.7 31 .............................A CGCTCGGCTGCTCGGCGGTGTTCAGATAGAC 22019 30 100.0 31 .............................. CGCTGCAGGTCAGCGTCGCCTCCGGCCTGTC 22080 30 96.7 31 .............................G CGTTCTCCGAGCACCAGTCGATCCCGAAATA 22141 30 100.0 31 .............................. GCGCCGCTCGTTAACGGCGGTTTGCGCATTA 22202 30 96.7 31 .............................G CCTACTACCTGGAGAAGGTTTTCAACTGCGG 22263 30 96.7 31 .............................G GAATCGCGCAGTCCGGATCACCCACCGGCAC 22324 30 100.0 31 .............................. GGCCCCGGCCGCGGTGGCGGGCGAGCGCGCC 22385 30 96.7 31 .............................A CCGCGACCGACGACGTAGGGCGCTACTACGG 22446 30 100.0 31 .............................. CGCGTGCGAGCACTTCGAAGCCCTTGCGGAC 22507 30 100.0 32 .............................. CGGCGCTGGTCGCTCAGGTTGCCGGACGTGAG 22569 30 96.7 31 .............................T CGCCGAAGCCGCCCGCCGACGCCGCACGGAA 22630 30 100.0 31 .............................. GTCAGAGTCCTGCTTCCACGACTGCTCCACC 22691 30 96.7 31 .............................T CGCGTCGGTGTTGCAGGACCGGCCGACGCGG 22752 30 100.0 31 .............................. CGGGCAGCACCGTGCGCACCAGGTCCTGCGC 22813 30 96.7 31 .............................A CCGCGATACCCAGGCCGAGGCACGCGAGGCT 22874 30 100.0 31 .............................. CTGGCGCGGTGGCGCTGATCGGTTGCGAGGC 22935 30 93.3 0 ............................TG | ========== ====== ====== ====== ============================== ================================ ================== 60 30 97.8 31 CTCGTCCCCGCGCTCGCGGGGGTCGTCCCC # Left flank : CTTGCGACCATCGTCAAAGACGTCAAACAACTGCTCAACCCACCTGACGTGGATCTGATCGACCAAGACCTCGGCGCCCTGTGGGACCCGAAGCTCGGCGAGGTCGCCAGCGGTGTCGACTGGAGCAGCACCCTGTTCGAGGAGCAGCGTTACCTGGAAGTGATCGGGCCCCTCATCGACGAGCCGAAGGCGGATTCGGCGACGTGACAGTCATCATCCTGATAGCCGCTCCGCCCGGATTACGAGGCCACATCACGCGCTGGATGGTCGAGGCGTCGGCAGGCGTCTTCGTGGGCAACCCGAACGCGCGGCTGAGAGACCGGCTGTGGGCGACGCTTGAAGAGCGCGTCGGCAGCGGCCAAGCCATCATGATCGAGCCCGCGCGCAATGAGCAGAGGTGGGCCGTGCGGACAGCCGGCACCGACAGGTGGAGTCCGGTCGACTTCGACGGACTGATGCTAATGGCCCGACCGCGCGCGTAAACCCCCAGGTGAACAAGT # Right flank : GTCTGGTCCGGACTTTCTTCGGACGCTAAGTGGTCGCGCCTGTAAGTCCTTCGGGGGTTGATCATGCGGCGAGGGAGAGGGAGGATTCTTGGTGTCGGAGGGAGTGTTCTTCTTGCTCTCGCCGGTCGAGTCGGGCCAGCAGATCTTCCAG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCGCTCGCGGGGGTCGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //