Array 1 114163-112807 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDA01000003.1 Pasteurella multocida subsp. multocida strain ATCC 11039 ZB100002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 114162 36 100.0 30 .................................... GATAAATGTTCGTGGTGGTCAATATGGTAG 114096 36 100.0 30 .................................... AACTTTATTCCATCTACTCGGGTTCCCCTC 114030 36 100.0 30 .................................... CAAATTTGCAAATACAACACTAAACATGGC 113964 36 100.0 30 .................................... TGTCTGCGCTTGAATTTGTCGCGTTTTCCG 113898 36 100.0 30 .................................... CATGGAGCAAAGGGATGTCAGTTAGACCGC 113832 36 100.0 30 .................................... ATATGACGTTGTGCTACCTCTAAAGCAGTT 113766 36 100.0 30 .................................... GAAATGCTCGTTGAACTAGAGCAATTTGAA 113700 36 100.0 30 .................................... ATTCTGACACACTTAACTTGAACCAAGTTT 113634 36 100.0 30 .................................... AAAGAATACACCCTTATTCCAAAAAGTTTG 113568 36 100.0 30 .................................... TGTAATCATATCTTCTGGCGGTTGTCCCGG 113502 36 100.0 30 .................................... GAACGCACAGGTGATAAAAGATTTACCAAT 113436 36 100.0 30 .................................... CTGATATGTCTTTACAAGATAACTTTCACG 113370 36 100.0 30 .................................... ATTTTTTTAATGAAAGATGAAAGTAATTAT 113304 36 100.0 30 .................................... TTTCAAGGTACAAACGTTGATAAACGTAGA 113238 36 100.0 30 .................................... GTCTGAACAGTATTAACACTTCCTGTTTCT 113172 36 100.0 30 .................................... GGGATTTTGTGTTAATTCTTTATTGTTAAA 113106 36 100.0 30 .................................... TTTCAGCATTTTGTTGCACTAATTCTTTAA 113040 36 100.0 30 .................................... CTGATCTAAATTTATATAATATATAAGGTA 112974 36 100.0 30 .................................... CGTTACCAAGCAAACCCGCCATAGCGGCTG 112908 36 100.0 30 .................................... TTTAACTGATTGTTAAGAAAGGTAGAACAA 112842 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : AAACTCCAGAGGAGTTAGGGCTAAAATCTACTATTGAACAATTAGATAAAAATAATCCAAGTAATGAAGAAGTTAGATATGGCTATGTGAAAAAAGAGGGATTTAATAAAGCAATACATGACAGCTTCAAAGATGTATCAACCAATATAGAAAAACAAAATAATAGAATCTATGATGATAAGAAATAGGAGAATTTTATATGTTAAAGAAATTAATCCTTTTCATGAAAAAATTGAGCTTGTTCTTAGATAAATTAAATGAAGAACAAAAGAAATTGAACCAAAAAGAAAAACCTCAATTTATCCGTACGAATATAAATGGATTGCCATTAAATAAAAATGGAGTTGATATAGAGGGGAATATCTATGGCTCGACAAGAAAAAGAGATTAGTCTAATAGATTACATTGATAGATAGGTTAGAAAATGAGCTTTAACGCAAAAAATATGACACAGGGCGGTCAAGTTATTAAATACATGATCGGTATGTTCATGCAGATTA # Right flank : GTTTCTGCCCTTATCCCTTATAACACAAGGGATAAGGGCATTTTTAATACTCAAAAATTACTTAAATTTACGATATTTAGTAGTCTATTTTTAGAAATTTTTTCTTAAAAAAACAATTGATTTTGTCTAATAGAGATAGCATCTGTTGTATGTTCCCCCTGTTTCTGAGTCACTCTAGGCTAAAATAGAGAATAGTCTTTTCGTTTATTTTTATAGAGTATATAAATAGTCTACTTAGAAAAGTAGCATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTTTCAACTTCCCTAATAGAATTTTCATACCTGCAAATTGTTTTTCAGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 96759-98646 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDA01000001.1 Pasteurella multocida subsp. multocida strain ATCC 11039 ZB100000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96759 28 100.0 32 ............................ CTTTCCATTCTAAGATAAATTGTTCAAGTGAA 96819 28 100.0 33 ............................ GATGATTATTTCGTTGTGTAGTCACAACTGCTT 96880 28 100.0 32 ............................ AAGCTGAATAAAAGCGCTAGCTTTTTCTCATT 96940 28 100.0 32 ............................ TTCTGTCAATTTATTTTGAGCCAATCCCCCTA 97000 28 100.0 32 ............................ TTCTAATTCCGGTTCAGATTCTGGTAATTCTT 97060 28 100.0 32 ............................ CTTGACCCCTTCAAACAAAAAATATGTTATCG 97120 28 100.0 32 ............................ TGTGAGTCAAGAGTTTATGAGAAAAACAAAAT 97180 28 100.0 32 ............................ GCCGTTTTATCATCAATTCAAAGAAGGCTTGC 97240 28 100.0 32 ............................ CGTAGAAGGTTCGATAATCCGAATTTATGTAT 97300 28 100.0 32 ............................ AGATAGGGTAACGCTTGTTAATTGGTTCAGTA 97360 28 100.0 32 ............................ AACTCCAAGCTGACTGTTGCGCTAGAGCTATC 97420 28 100.0 32 ............................ AAAAACACGAAGGAAAAATGGCATTTGTCGAA 97480 28 100.0 32 ............................ AGATGGAACACTTCTAATTACAGATGAAGAAA 97540 28 100.0 32 ............................ TTTGGAATCGGTGGAAGTGGTCGCCAGTGAGT 97600 28 100.0 32 ............................ TTGAAGAATGGGAAAAAGAAGATAAAGAGCTT 97660 28 100.0 32 ............................ ATGAGTTGTTTCTCTTTCATCTAACACTTCTT 97720 28 100.0 32 ............................ TATATCAAACGTCACTATTATTGGTTTTGTCG 97780 28 100.0 32 ............................ CGCAGCACAACATATTCACGCCCACGCAACAG 97840 28 100.0 32 ............................ AAGCTTGGCTTGATGCCATGAAAAATGCACGG 97900 28 100.0 32 ............................ ATTGGCGAACGTTGAAAAAACGGCTCTTTTTC 97960 28 100.0 32 ............................ CGTGACCAATATCAGCGTGGCCACAAGTGAAG 98020 28 100.0 32 ............................ ACGTGTCGATAGAAATGAGTACAAGATGAGAG 98080 28 100.0 32 ............................ AGTAACGCACAGATTAAAAATCTGCCGCTCTA 98140 28 100.0 32 ............................ GCTTTTATGCCGGAACAAATGAATTAACTCGA 98200 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 98260 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 98320 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 98380 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 98440 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 98500 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 98560 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 98620 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTGCTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAATTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCACTGGCATTCACAATCTGCTGTGCTAACTCAGATAACGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 175194-173666 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDA01000004.1 Pasteurella multocida subsp. multocida strain ATCC 11039 ZB100003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 175193 28 100.0 32 ............................ TTACGCTTACCCTCAATAACCAATGACTCATA 175133 28 100.0 32 ............................ ACAGGCTGAAGAATACAGAAAAATTAAATCAT 175073 28 100.0 32 ............................ AAACTGTCTAAGACTGCCGTAAAATTTAACGT 175013 28 100.0 32 ............................ AAAATAACAAAGGCGATATTTACGGTTCATCT 174953 28 100.0 32 ............................ TGCTGCGTTATGTCCGATTTGCGCGAGTGCTC 174893 28 100.0 32 ............................ TGCTGGTAAAGCCTATGTAGCAGTCCTACCAT 174833 28 100.0 32 ............................ TATTTTGCGACCAGATTCAACCATGCCATTGG 174773 28 100.0 32 ............................ GTTGCTGTCAACTGCTGATGATTTTTTACTAT 174713 28 100.0 32 ............................ TGTTGGTAAAAAACTGACAGAAGTATTGATTA 174653 28 100.0 32 ............................ ACGCTGTGCGGAACGCTTAACCAGCTCATCTT 174593 28 100.0 32 ............................ ACCCAGTCACCACCCAAGCCTACAACAAGAGG 174533 28 100.0 32 ............................ TCAGAACCAAAGTTATTCGTTTGATTAATTAC 174473 28 100.0 32 ............................ CAATTTGGCGATGGTTACGAACAAAGATTAAA 174413 28 100.0 32 ............................ ATCTGGATTGCAGGGGATTCAAGGTCTGCCCG 174353 28 100.0 32 ............................ TCTCCACCCATAACACCCGTCAAAGACCTGCC 174293 28 100.0 32 ............................ TCTCCACCCATAACACCCGTCAAAGACCTGCC 174233 28 100.0 32 ............................ CTTTTTCCAGTCCAATATCCATGCCAGTGCGC 174173 28 100.0 32 ............................ TGATAAATTGAATATTCGGGCCCGTAGTGCTG 174113 28 100.0 32 ............................ TCACTAGTCATTCCCCATTGTGTTTTCCATTT 174053 28 100.0 32 ............................ AAAACTGCGGGAATTTATTCAAAAAGGCTACT 173993 28 100.0 32 ............................ GGCTGTTTCTAATATTGTTTTAATATCCTGTT 173933 28 100.0 32 ............................ ATTGTTGCGCGATATTGAATGATAAAGCCCGA 173873 28 100.0 32 ............................ TTCTTCTGCTCCGTTAATGTATCAACGCCAGA 173813 28 100.0 32 ............................ ATTTCAAACCTTTGAGCGTGAAAGCAGTTGGC 173753 28 100.0 32 ............................ AAAAAACCTTTCGATTAAAGAGGCGAGTGCGT 173693 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAACAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATTGGAAGAGAACGAGTTCGAATCGTAAACCCTCGCCAGTTTTTAAAACTGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGATTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAAGTGAATATCGACCTGTAATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //