Array 1 100997-100113 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPQ01000013.1 Salmonella bongori strain CATO-2016 NODE_13_length_153725_cov_50.8833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 100996 29 100.0 32 ............................. ACGAGTTTCCGCAGTCCGGCAACTATGAAACC 100935 29 100.0 32 ............................. ACGAGTTTCCGCAGTCCGGCAACTATGAAACC 100874 29 100.0 32 ............................. ACGAGTTTCCGCAGTCCGGCAACTATGAAACC 100813 29 100.0 32 ............................. ACGAGTTTCCGCAGTCCGGCAACTATGAAACC 100752 29 100.0 32 ............................. ACGAGTTTCCGCAGTCCGGCAACTATGAAACC 100691 29 96.6 33 ............................A AGAGACCGATGCACTCGGCCAGCCGTTGCTGGA 100629 29 96.6 32 ............................T GGCGCTGAATGCGGTTCTGCATTAATTCATCA 100568 29 100.0 32 ............................. CAAAACTGGAAATGTTCACGTCGTCCCCCTTT 100507 29 100.0 32 ............................. GACATAACCGGGTTTTGCCGACACAAGGGGTT 100446 29 100.0 32 ............................. CACACAATATATAATTGTGCTCCACATGGTCA 100385 29 100.0 32 ............................. ACGAGTTTAAAAATAATGGACGCTAAAAATCA 100324 29 100.0 32 ............................. CGTATGGAGAGATTGGCAAAGATTTAGGGTAG 100263 29 100.0 32 ............................. GTCAGAATGACGAATTTCCCTGAATTATCAGA 100202 29 100.0 32 ............................. CAATGACCTCCCACCATAGTACCAATACCAGC 100141 29 79.3 0 .....................C.TTTA.T | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCCGCCGGAGAAATTGAACCGCCTCAACCCGCGCCGGATATGCTGCCGCCCGCGATACCGGAGCCGGAATCTCTGGGTGACAGTGGGCATCGGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATGTAGATGGGCTCAGGCTGGTTTCCTTTCTTCCTATTCAAAATCAATAAGTTGAAGGCTCTTTAATAATAAGGAATTGTTGCTTTAGCGTTGGTAGGTTGTTATTAAGCCAAAAAACGTTTTTAGAACAATTACATAGATTTAGA # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACATGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATGCTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGTTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACGTTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTTTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 117934-116990 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPQ01000013.1 Salmonella bongori strain CATO-2016 NODE_13_length_153725_cov_50.8833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 117933 29 100.0 32 ............................. AGAACAGTATATTGTCGCCGAGCGTTACACGT 117872 29 96.6 32 ............................T GACGCGCCAGCTCCACGCACATGCCGCGAGTC 117811 29 100.0 32 ............................. CCATATTTAGACTTGTTCCCTATCGTTGCTGG 117750 29 100.0 32 ............................. CCGCAGTTGCCGTTAACACTCAGATTATTAAT 117689 29 100.0 32 ............................. TCAGTACAGAATGATTCCCCTGTTATTGGTGG 117628 29 100.0 32 ............................. ATTTTTTGATTTACTATCAGCGTATAATTGGG 117567 29 100.0 32 ............................. TGAATAATGTTATGGCTAAATACGGGTACGCC 117506 29 100.0 32 ............................. ACGACTCAGGATCTCCAGTGTTACGTAGAGCG 117445 29 100.0 32 ............................. CGCCTAAACTCAGGGCGATCCAAATTTTTCCC 117384 29 100.0 32 ............................. TCCGCCTGTACATTCTGCTAAGAAGTGAAATT 117323 29 96.6 32 .................A........... GCGTTGGCGGAGACGGACTTGCAGCCCGGCAG 117262 29 96.6 32 ............................A CTTGAGCATGAACACATCATGCAGGTGACACA 117201 29 100.0 32 ............................. CAGATATTACTGCTCTCCGTCAACTGGTAAAC 117140 29 100.0 32 ............................. GAACGTGGAATCAAACACGCACTGGTTAATAC 117079 29 100.0 32 ............................. GCGGTTTTTTTATCAGTCAGGGTGAGGGAATA 117018 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCGCTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCCATTAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGACTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTATCTATCATCTTGCGTTCGCTATTTCTCCAAAAATTCGAGGAATGTATAAAGTAGTTGAATAATTTTCCATAGCGAGACATGGATCACACTATTCTGGTGAGTTTAAAGAAAAAATCGTTCACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATGTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : TTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTGAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACCTCGATATTATTCGATACCGGACCTGACGACAGTTTTATACAAAATGCGTCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGTTACCGAATGGTGTACGCGCGCGACCCTATGCCAATTAGCGACAAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //