Array 1 25357-23077 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQBU01000026.1 Neisseria meningitidis strain M27788 M27788_HUY3803A49_ctg_10632, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25356 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 25290 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 25224 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 25158 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 25092 36 100.0 30 .................................... ACAAAGCCGCAAATCGTCCGCCGCGTATCA 25026 36 100.0 30 .................................... TTGCCGGATGAAGAGGTGGCGTTTGTTGCC 24960 36 100.0 30 .................................... TCAATGATAAAACTAAAGTTTAAACAGAAC 24894 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 24828 36 100.0 30 .................................... CTGAAGCCTCTCTTTTAACGCCATTTTTAT 24762 36 100.0 30 .................................... GTCAAGCATACTAAACGATTAATAGCTTAG 24696 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 24630 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 24564 36 100.0 30 .................................... ACAAAGCCGCAAATCGTCCGCCGCGTATCA 24498 36 100.0 30 .................................... TTGCCGGATGAAGAGGTGGCGTTTGTTGCC 24432 36 100.0 30 .................................... TCAATGATAAAACTAAAGTTTAAACAGAAC 24366 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 24300 36 100.0 30 .................................... CTGAAGCCTCTCTTTTAACGCCATTTTTAT 24234 36 100.0 30 .................................... GTCAAGCATACTAAACGATTAATAGCTTAG 24168 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 24102 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 24036 36 100.0 30 .................................... TCATAATTGTATAGGTAAATGTCATCAACA 23970 36 100.0 30 .................................... CTGATGAGTTCTCTACGCATGGGACGTAGG 23904 36 100.0 30 .................................... GTGCATTCTGCCTCGTCGGCTGGTACGTAA 23838 36 100.0 30 .................................... TCAGTTGTTTGATTTAAGCAAGATTCCTGT 23772 36 100.0 30 .................................... GCGTAGAACAACCGGCAATGACTAATTTTG 23706 36 100.0 30 .................................... TGAAGTTGCGCCGATTGCACCAACTGATGC 23640 36 100.0 30 .................................... ATCCGTTTGAGGCTAACAAGCCAGCCACTA 23574 36 100.0 30 .................................... AAATTCGAGCAAAGATAGAAGCAACTTGTT 23508 36 100.0 30 .................................... TGAGTTGTAGTTGTAGCTAGCATCAATAGA 23442 36 100.0 30 .................................... AAATGACGATGCGGAACGATTCAGGCAGAG 23376 36 100.0 30 .................................... GTGTGCCTCACTGTGCGCATTAAGTTGGTC 23310 36 100.0 30 .................................... AATGACGAGGCTTTGGATTGCGAGGATTTA 23244 36 100.0 30 .................................... TTTTATGTTTCATATGGACGCGGTTTGGTG 23178 36 100.0 30 .................................... AGTATTGGTCGTGACGACTGTCCTTGCTGT 23112 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 35 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAGCGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //