Array 1 4059-2443 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEW010000022.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-34 NODE_22_length_51033_cov_3.201803, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4058 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 3996 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 3935 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 3874 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 3813 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 3752 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 3691 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 3630 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 3569 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 3508 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 3447 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 3386 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 3325 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 3264 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 3203 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 3142 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 3081 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 3020 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 2958 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 2897 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 2836 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 2775 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 2714 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 2653 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 2592 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 2531 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 2470 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47542-45644 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEW010000024.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-34 NODE_24_length_48974_cov_3.045817, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 47541 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 47480 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 47419 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 47358 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 47296 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 47235 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 47174 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 47113 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 47052 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 46991 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 46930 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 46869 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 46808 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 46747 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 46686 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 46625 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 46564 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 46503 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 46442 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 46381 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 46323 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 46262 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 46201 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 46140 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 46079 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 46018 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 45957 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 45896 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 45795 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 45734 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 45673 29 93.1 0 A...........T................ | A [45646] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //