Array 1 61182-59508 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGHE01000002.1 Canicola haemoglobinophilus strain NCTC10619, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 61181 37 100.0 34 ..................................... GGAGTTCCACCCAAGATTTTATCGCCACGCTTGT 61110 37 100.0 34 ..................................... GTTTTTATTTTTGTAATAAGTTTCGTGCATTTCT 61039 37 100.0 36 ..................................... GCATAGCGTGCCCCAGCTGTGGACGCAATGTCCACG 60966 37 100.0 36 ..................................... TGTTGTAACGCGGTATTTAAATCCGCGTCTTTCGTA 60893 37 100.0 34 ..................................... TACGGTTTATTTAAAGTGATGTGGACTTGATTGT 60822 37 100.0 30 ..................................... AAATATTTTTCTAATTTTCTTTGTACTTCT 60755 37 100.0 33 ..................................... AGATATAAATAAGGAGTCAAAGATGGAAAAAAT 60685 37 100.0 34 ..................................... ACAATTAGCGTACCAACGCTAATGCAATTTCTTC 60614 37 100.0 35 ..................................... TTTAAATCCGCGTCTTTCGCAACGGCGGAGAAATC 60542 37 100.0 35 ..................................... ATAGATGGTGGTAGTTTGTTCTATTGCGATAATTA 60470 37 100.0 36 ..................................... TGACCACTATGACCTACAGTGAGGTTAGGGATCATT 60397 37 100.0 31 ..................................... TTCTGGGAGTAGTTTATCTACTGCACCATCT 60329 37 100.0 36 ..................................... GATAAGATTTGTTGAGGGTAATGTGGACCTGGTTGT 60256 37 100.0 32 ..................................... ACCACAGCCGTCGATTAAAGCACTATAATGAA 60187 37 100.0 36 ..................................... CTAACTAGCATTCTTTCCTGAATGCTTTCTTTTGTT 60114 37 100.0 34 ..................................... ATCATACCACTTTTGATTAGCGACGTACACGAGC 60043 37 100.0 36 ..................................... CTGAGTTAGATTAACAGTTAATGTAGCCATAATTTC 59970 37 100.0 34 ..................................... AAATATTAAACTCGTTGATAGTGGGAAGAGTAGG 59899 37 100.0 33 ..................................... CTTCTCAGACATGAAGCCTCCTATAATAAGCAA 59829 37 100.0 35 ..................................... TACCGAGACTTCGTTATTCAGATTGTGAGTTTGTT 59757 37 100.0 33 ..................................... GAACAAAATACTCTAAACCTAACATTGCAAAAC 59687 37 100.0 35 ..................................... CCAAAGACCTTTACCTACACCACCAAGAAGCTTCA 59615 37 100.0 34 ..................................... TTCAGTCATCTGAAGGTCAAACTGAGATTGGCCG 59544 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 24 37 100.0 34 GTCGAAAGACACTGCCCTGTTCTAAAGGGATTGAGAC # Left flank : TGAAATATTTAATTGGCTACGATATTTCTGATGAAAAACGGCTACAAAAAATTCATAAGCGTATGACCAAATATGCCACGCCTATTCAATATAGTATTTTCTTGTTTGAAGGGACTGAAAAAACGCTACGACATTGTATCGAAGATGTGCTAGATATTTTCAATAAAAAAGAAGATGACTTACGGATTTATCCTTTACCAAAAGAGGCAAAACAGTGGCAATTTGGCAAAAGTATTTTACCTGAAGGGATTATTTGGACCGCACTTCCACCTAATCAAACACATGCGTATCATTAACTTTTCGAGAATATTCCCTCTTTACTCGCATTTATTAAGGAATTTAGGTAGAATACCGCACGTTTTTTGACAATAATCACAGGGTATTTTTAAATAAATTGATTATTTTTCAATCAAATCAACACCCAACTCTTCAGACCTTGCAAAAGCTTGGGGAACCTATTTATAACTCATTGAAAAACAAAATAAAAATCGCCCTGTGCA # Right flank : CCGGGTAGTGTGTTCTTTCCATCATGCACTTCAAGCTGATAATAACAATATTAAAAATGATCCTTACATCCTTGGTATCCTTTATTTATTTGGCTTAGGTGGCAAAGCGGATTTAGAAAGAGCGGTCTATTTTTTGCAAAAATCTGAAAATATAAATGAAGGAAGAGCGGGTATTTATCTTGCCTATCTAGCAGGAATGGGAGTAAAGGTTGCAGAAAAATATCAACATTTTGATTTTGAGCCTTGGACACAAAAAGGCGAGGCATTTGCTCAAGTGCTATTAGCTGATAAATTGCACCAAGCAGGACAATATAAGCAAGCATTTATGTGGACAGAAAAGTCGGCTAAACAAGGAAACTCCATGGCTCAAGCTGCGATGGGTGCCTATTATATTGATGGCGATATAGTGGAAAGAAATCTCAATTTAGCGGTTAAATGGCTAAATTTAGCGGTGGCACAAAATAACCCACAGGCACAACATCTATTAGGTAACCTCTATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACACTGCCCTGTTCTAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1566620-1566188 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGHE01000002.1 Canicola haemoglobinophilus strain NCTC10619, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1566619 32 100.0 34 ................................ TCAGAGAAGTTGACTAAGGTTTCAATCAACGAAC 1566553 32 100.0 35 ................................ TAAATTATTTCAGGATCATTTAACCATTCACTAAA 1566486 32 100.0 34 ................................ TCAGAGAAGTTGACTAAGGTTTCAATCAACGAAC 1566420 32 100.0 36 ................................ AGATCTAGTCATCTCGGTGCGACGTAAGTAAATTAG 1566352 32 96.9 36 ......A......................... AGATCTAGTCATCTCGGTGCGACGTAAGTAAATTAG 1566284 32 96.9 33 ......A......................... TAGTCATCGTTTGGATCGGATTCGCGATCCGAG 1566219 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 99.1 35 GCAGCCGCCTTTGCGCGGCTGTGAATTGAAAC # Left flank : TGTAAGGAACGAGATTATGCTGATGTTAATTACTTATGATATTTCCTTTGATGACCCTGAAGGACAAGCACGTTTACGCCGTATTGCGAAGCATTGTTTAGATTATGGTGTGCGTGCACAGTATTCCGTTTTTGAATGTGATGTAACGCCTGACCAATGGGTAAAGCTCAAAAATAAATTACTCGCCACCTATAATCCTGAATGCGATAGTTTACGCTTTTACCATTTAGGCAGTAAATGGCGTAATAAAGTGGAACATCATGGCGCTAAACCTTCAGTCGATATTTTCAAAGATGTCCTAATTTTATAAATCGCTAACCTATTGTTCTCATCAAAAGTTAGGGCGGTTAGCGATATTAAATTGCTCTTTAATAATCAAATAATTATCAAAAAAATATAAAGCAAATCTGGCTTATGCTATAATTTTTTAACTCCTTACAAGATGGTTAGCGAATAGAAGGCTATAAAACCTGATATTTCAATAGGTTATCGAGTAGGGA # Right flank : AGCGGCGTGATCCAGCTTGGTTTATGACACCGACTGAACAACGCAACAGCTTACGTTTGCGTGATGGTTCAGTTACAGGTATTGAGTTACAGAAATTTGGCTGGATTACACATATTGCGAAAGCAAAAACTGGTTATCTTTCTCGCATTGGTCTAGTTCGCACACTCGTGTGGCCGTTTCTTTATAAAAACTATTCAGCACGAGATTTTGCTGAGTTTTTGGAGATTTATGGCTTACCTATGCGATTGGGTAAATATCCTGAAGGGGCAACGCCAACAGAAAAAAACACCTTATTACGTGCAGTAATGAGCATTGGTCATAATGCAGGAGGGATTATTCCACGAGGAATGGAGATTGAATTTCAGAATGCAGCTGATGGTGACAGTTCATCATTTATGGCAATGATTGAATGGGCTGAAAAATCCATGTCTAAGGCGATTTTAGGCGGTACATTAACTTCACAAGCAGATGGTGCAACCTCAACTAACGCTTTAGGCAAT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTTGCGCGGCTGTGAATTGAAAC # Alternate repeat : GCAGCCACCTTTGCGCGGCTGTGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : NA //