Array 1 13759-11532 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQOS01000056.1 Streptomyces sp. Alain-F2R5 NODE_56_length_41112_cov_2.75219, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13758 29 100.0 32 ............................. TCCTCGACGTCGTCCGCGTTCACGTCCCCGGC 13697 29 100.0 32 ............................. CCCTGCGCCGCGCCCGGGTCTTCCTCCGTGCC 13636 29 100.0 32 ............................. TTCTCCATGATCCGGCCCCAGTCGGGGTCACC 13575 29 100.0 32 ............................. ATCCGCGCCAACGCCAAGAACGGGTCCGTCTG 13514 29 100.0 32 ............................. CCCGCCAGCAAGAACACCATCGAGGCCCAGCG 13453 29 100.0 32 ............................. CTGTCCGAGCGCTTCAGGTACAGGGTGCACAG 13392 29 100.0 32 ............................. GAGATGCCGGAGTTGCTGCCCAAGGCCCAGCC 13331 29 100.0 32 ............................. CAGCACCTGCACCAGCGACCGGCCCCAGCACT 13270 29 100.0 32 ............................. CTGGGGGTCCCGCTCCCGCTCACCCCGGAGCA 13209 29 100.0 32 ............................. AGCGCGGCTACGGGCCGTGCACCGGAGGTGAG 13148 29 100.0 32 ............................. TGGATCCTTCTTCCCCGGGCGGGGGCCGGCCG 13087 29 100.0 32 ............................. TACGGCAACGCCGTCACCCCGCCCGTGGCCGA 13026 29 100.0 32 ............................. GCTCTCCATGCGTCGGCGGCGATCAGGGCGAT 12965 29 100.0 32 ............................. CGCTGTACGGCCGTCTGAGCGCCTGTCAGCCT 12904 29 100.0 32 ............................. CTGGGCGAGCACGGCGGAGGCGTTCGGGGACA 12843 29 100.0 32 ............................. GCCCTCTCGTTCATCAAGGGGTCCGAGGACTC 12782 29 100.0 32 ............................. CCCCTCGACCAGGCCCGGATCGGCGTCGACTA 12721 29 100.0 32 ............................. GAGATGGTGCCGAGGTAGGCCTGCTCGGCGTC 12660 29 100.0 32 ............................. TTGACTGGCACCAGCGTTCCCGTCTGGACCAC 12599 29 100.0 32 ............................. ACCCCCCGATCTCCCGCTGGCTCCTCAACCCC 12538 29 100.0 32 ............................. TCCCTGGAACGGCAGATTGCCCTCCTGGAGTC 12477 29 100.0 33 ............................. CTACGCGGCGCACGTCGCCGTGTCCGTGGCGAT 12415 29 100.0 32 ............................. CCGCCGACGAACGCGCCTGGCTCGACCAATGG 12354 29 100.0 32 ............................. GCCAGTTGGAGGACGCTCTCAGGCGGGCAGCG 12293 29 100.0 32 ............................. CCGGGCACGGACTCCTCGGCGGGGAAATGCCG 12232 29 100.0 32 ............................. GGCCGGCCGAACGCGAGATGTTCTTCTACGGC 12171 29 100.0 32 ............................. TGGGCGATGTGGACCGCCACGGTGACGCCCGG 12110 29 100.0 32 ............................. CCGAGCGGCTCGCCGACACCGGACCCGGCCAT 12049 29 100.0 32 ............................. ACCGTGGCCCAACTCCCAGGCCCGGGACCGGG 11988 29 100.0 32 ............................. GTGTACGGGGCGCTTGAAGAACACCAGACCGC 11927 29 100.0 32 ............................. CCGTCCACCTGCATCACGGCCACGGCCTACGG 11866 29 100.0 32 ............................. CAGTGCACGCTTTCGGTGTCCCGTTGGGTGGC 11805 29 100.0 32 ............................. TGCACCCGGGTCAGCTCCGGAATGCCCTTCTT 11744 29 100.0 32 ............................. CGCACCCGGGAAACCGTGCAGGCCGCGCCGCC 11683 29 100.0 32 ............................. CCGACACCGCGCGGCCGGCCCCCACAAACCAC 11622 29 100.0 32 ............................. GAGGGGCGTTGGCCAGAACCCTCCTTGGTGCG 11561 29 89.7 0 ........................G.AA. | C [11535] ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.7 32 GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Left flank : CCTCCTCCCACGCATCATTCAGGACGTCCAGACACTCCTGACACCACGACAGCAAGACGCAGCGGAGCCCTCCGAGCGCCGCGACGTCGAAATGGTCCACCTCTGGGACCCCAAGGCTGGAGTTCTCCCAGCCGGGACCAACTACGCCGCAGGAACACCCTGATGCCCTCGATGCTGGTCATCGCTACTACCGCAGTTCCCGACCACCTGCGTGGCGCACTGAGCCGCTGGACCAGCGAAGTCGTACCGGGCATCTTCGTGGGAAGCGTCTCCGCACGCGTTCGCGACCGACTCTGGCAAGCCGTCACCGAAACCGTCGGAGACGGCGCAGCCGTCCTCGTACATCCAGCCCCTACAGAACAGGGGTATGCCATCCGCACCGCAGGAAGCCGCCGCCGCGTCCCCGAAGACTTCGACGGCCTCACCCTCATCCGCATGAGAGCCGCCCCTCACCGGGTAAAGGAAGTGCAAAGCCCTCCTTAAGGCGCAGGTCGCCGAGG # Right flank : TGCGCGCGGACGGTGGCATGAGGCTGCGGCGTCGTCACCGCCCCACCGCCACCCGCGCCCGGTGGGTCGCCTCCGTCCTCCGCCGGCGTCGGGTGATGCGGGGCCCCTCGGCTTGTCTGACCTGGCTTGTTCTCCTCTTCCTTGATCACCCCGGGTGCTGATCTGCTGACACGTTGTCAGTGCCTGGTGTCAGCATGTCCTGGTGTAGGGGGAAGTCGGCGACGAGGGGGAGGCTTGCATGCCGTGGGTTCGGCCGTACGTACGCTCTGACGGAACACCGGTCCGCGGGCATTCGCGGTGGGCGCCGGGCGCCAGACGGGAAACGATGATCTTCAGCGTGGTGGCCCTGGCCGTCATCGGCCTGGGCCACAGCAACATCTCCACGGGCGACGGGAGCACCCCGCGGCCGCAGACCACCGTCCAGTACCCGATCCGCTTCGACGACGCACCCGCCGTGCGGGCGCCGCAGCCGCGCCCCACCGTCTCGTACCCGATCCGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23028-27976 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQOS01000056.1 Streptomyces sp. Alain-F2R5 NODE_56_length_41112_cov_2.75219, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================================== ================== 23028 33 87.9 28 .............................CGGC GCCTTGACCAGGCCGTGGCCGTGGCCGT 23089 32 90.9 27 ........-....................CT.. GCATTGCCAGACGCCACGGTTGCGCCG G [23119] 23149 33 93.9 28 ..............................AG. TGGGGATGGCTGCTGCGGTGGTGTTGCC 23210 33 93.9 28 .............................A.G. CACAGGTCGGCACCGCACGCGCCACCGA 23271 33 90.9 28 ..............................AGA TCAGCCAGTCGTCAGCCCTGTGGGGCTT 23332 33 90.9 28 .............................CTG. CCCGGACGATGGCGGAGGCCGCCGGCTA 23393 33 93.9 28 .............................GT.. ACGTGGACGGCCTGGAGGGCTCTGTCTC 23454 32 87.9 28 ......................-......ATG. CGGAGGCCGACGCGCGGACGTACATCGA 23514 33 100.0 28 ................................. AGACCCGGATGCAGATCAGCCGTGGCAG 23575 33 90.9 28 .............................A.GC GTCACGGGCACGTGAACGCGTACAAGAG 23636 33 97.0 28 .............................G... AGCGGGACCGCGCGTACCGCGAGCGTGC 23697 33 90.9 28 .............................A.GA CATGGGCCGCCACGGTGACGCGGTGCGG 23758 33 93.9 28 .............................CG.. AGGGGATGAGTGAGACCGAGGCAGCAGT 23819 33 97.0 26 ................................C AGCTTCCAGAACTCCCTCTGGGACTG AA [23848] 23880 33 87.9 28 ........................C....GTG. CCGGCCAGTCCATCTACGTGCAGGATGG 23941 33 84.8 26 .C.T........A...........C....A... CATGGCTTGCATGGTGATGAGTGAGT G [23972] 24002 33 87.9 28 ........T.....G................GT CGCCGACCTGGGGAGAGCTGACGTGGAC 24063 33 69.7 28 .......GT.T....A......C....G.CGAA CGCGGTCGGGGTGGCCTGGAGACGCTGC 24124 33 90.9 28 .............................AT.C TGGCCGCGGCACGGTCTTGGGGCGTCCC 24185 33 90.9 28 .......................A.C...A... CCGCCCACCGCCTCACGAAGTGGGTCCC 24246 33 84.8 26 .C...................A...C...CT.. CCCCCCGGCCGACGTTCGAACTTCAT AG [24276] 24307 33 93.9 27 .............................G.T. ACGGCGTACACGGAGATCCCGAGCGAG AA [24336] 24369 33 90.9 28 ..................A..........A..A CCAGCTCCTGGCAGCCGTACGACCCGGC 24430 33 84.8 28 ............A................CTGC TCGGGTGTCAGCGCGCCGTGGTGGCGCA 24491 33 93.9 28 ...............................GC GGTGGACGAGCTGCGCCATGACGGTGGT 24552 33 90.9 28 .............................G.AT CGCCCGTCCACCGCGGCCGGTCGTCACG 24613 33 93.9 14 ..............................A.A ACAACGCCGACCCG Deletion [24660] 24660 33 75.8 28 ..G.AG..G.G..T...............A.G. CGCTCATCTTCGCAGAGGTGTCCATGTC 24721 33 87.9 28 ...............A..............TGC AGAGCTACTACCTGTACGAAGGGTTCGA 24782 33 93.9 28 ..............................A.C TGCCGTTCGCGAACGGCGGCATGGTCTG 24843 33 93.9 28 ...............................AT CGGCATGGCGGACGAGTGGCCGTGCTTC 24904 33 93.9 28 ...............................GA GTGTCGCGCCGTTCGTGGCGAAGGACTC 24965 33 90.9 27 .............................GTG. TGGGCCGGTGGCGTCCCAGACGCGCTT 25025 33 100.0 28 ................................. ACACAGTCCCGGACCCGGTGTGACAGCC 25086 33 87.9 28 .............................GTGA CGTGCCCCTCGAACCCGGGGTCGATGAA 25147 33 90.9 28 .............................G.GT CGAACTCCTCGATGCCGAGGTTGCGCAG 25208 33 93.9 28 ..............................G.T ACGACGTCCGCATCCCCGGGTATGCCCG 25269 33 90.9 27 ..........T..................CG.. TCTCGACGGGCACTTCGGTTGGGACAC G [25300] 25330 33 87.9 28 .............................CAGA AGTCCGCGATCCGCCGCTACTGGCGGCT 25391 33 97.0 21 .............................C... GCGACCTCCCACCCCGACCGC GAGTG [25420] Deletion [25445] 25450 33 90.9 28 ..............................TGC TGCGGAGGTTGTCCGGGCGGACCGCGCC 25511 33 97.0 28 ...............................G. CGTACGTGTTACCGGTGATGCCGATCCG 25572 33 90.9 28 .............................GTG. ACGGCGCCGTACTCCTTGCGGTGCCCGC 25633 33 87.9 28 .........................C...CGT. CCTTGACCCAGGGGCCGAAGATGTCGGT 25694 33 97.0 28 .........C....................... CAAGGCGACCCCCGGAAGGCGAGCAGCG A [25703] 25756 33 90.9 28 ...................AA........C... ACGAAGCGCTCGAGGCTGAGTGCGCTGC 25817 33 90.9 28 ..............................AGC CCTCTTCGCTGGTCTCAGTCGTGACGCC 25878 33 90.9 28 .............................A.GT TGTCGATGAGGTCGAGGTGTCGGGCTTG 25939 33 87.9 28 .............................CGGC AGCAGCTCCTCGACGCCCTCGCGCAGGC 26000 33 81.8 28 ............A...............ACTGC TCGGGTGTCAGCGCGGCGTGGTGGCGCA 26061 33 87.9 28 .........A....................TGC TGGCGGTCGACCAGGGTGAGGCCAGTCG 26122 33 97.0 28 .............................G... TGCCGTCCAGCGTGTAGTCAAAGTGGCC C [26127] 26184 33 90.9 28 .........................C...G.G. CCCCGCCAGTCCTCCGCCCCTTCTTCCC 26245 33 90.9 28 ....................A........G..A CCGCGCTCACCACGGCCCGGACGCTGCA 26306 33 87.9 28 ...T.........................A.GA GTGCGTCGAGGGCCTGGCCCGTCTGGTC 26367 33 90.9 28 ......................C......C..C GCTCTGCGGCGGGGCTCTGTGGGCACAC 26428 33 90.9 28 ....................C.........T.A CACGGTCCAGGAACCCCACCCCATCCAT 26489 33 87.9 27 ............A................AT.A AGGCGACTCGGACCCAGTTCCAGGACA 26549 33 84.8 28 CG..C...................C......A. CAGCGGCATGTGGCCCGTCCTGGTCGAG G [26551] 26611 33 84.8 0 .....................A..C..GTA... - Deletion [26644] 26644 33 97.0 27 ..............................G.. CCAGTGGCAGGGCGCCATGCGGTCGCA G [26673] 26705 33 97.0 28 .............................C... CGACCTCGTCCTGCTTGTGCGTGACGTC 26766 33 84.8 28 ............A...........C....A.GA TCCGGTACTCGGGGGTGCCCGACTCGGA 26827 33 93.9 27 ............A...........C........ GCAGTGGCAGGGCGCCATGCGCGACCA G [26856] 26888 33 87.9 28 .............................ATGT CGCCGATGATCTCGACGACGTTGCCGCC 26949 33 75.8 28 ................G.....G.GG...CAGA GCGCGGACGGGCTGAGGCAGAGTGTCCT 27010 33 84.8 28 ......T.T..............A.....C.A. CACCGACCAGACCGGGGACGATGAGGAG 27071 33 87.9 28 .....................A.......G.TC GCGGCACGCAGGGGTCCGGCATCCTGTC 27132 33 93.9 28 ..............................GA. ACTTGGTCGATCCAGTCTTGAGGTCCCG 27193 33 93.9 28 ...............................GT TCTCCTCGTCGCAGGAACTGGCGTTCCG 27254 33 93.9 28 .............................C..C GGGACCCCACCACAGGCCCGGGGCTTCG 27315 33 75.8 27 .........A............CT.C.GA.GA. CGAGGCCGACGCCCGCCAGGCCGTCGC 27375 33 93.9 28 .............................GT.. ACCTGGACGCGTTCGACGACGCGCCGCT 27436 33 90.9 28 ..............................GAT CCGCCACATCGGCGTACCCCATCCCCGC 27497 33 84.8 28 .................A...........GTGA AACCGCTGGGCTGGTGGCCCTGCCTCAT 27558 33 75.8 28 .C...AT..A.......A..A.........GG. CCACCACGTCGGCATAGCCCTCCCCCTC 27619 33 93.9 51 ..T...............A.............. GACCCTGGAGAACCGTCCGACGCACTCGATGTCCTACGCCAAGGCGCGCGA C [27648] 27704 33 90.9 24 ...T..T.......G.................. GCCCTGGGTGCGCGCGGCAGGCCC G [27735] 27762 33 90.9 28 ....................A........C.G. GATCGCTGCAAGACGCCATCGCCGCCCG 27823 33 90.9 26 ..T..........................C.T. CTCGCCGCCGCCGGGAGCAGGACGAC AG [27853] 27884 33 84.8 27 .................C..A........GT.A CGCGCGGCGCGCTGCCTCGAACAACCT 27944 32 72.7 0 ...G.....A....T.TC.T.-..C.....G.. | C [27973] ========== ====== ====== ====== ================================= =================================================== ================== 82 33 89.8 27 GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCCG # Left flank : ACTCATCCCCGCGCGCTCACCAGCCAGCCGCGCGGAAAGATACTCACTGCCCCGCGGCGAGCAGAACTGAAACCCCGACACCTTGCCGATGTCATGCAACCCGGCACACAGCCCCACAACCGCCCGCGCACGCTCCAGCCGGCCCGCCAGCCCCATCCCCTCAGCAATCCGAGCACGCTGGCTCTCCGACAGGAACACATCCCACAAGTGCAACGCCATCGCCGCCGCATCCAACAAATGCCGGATCAACGGATACGGCGGCACCCCCGGATCCAGCCCCCTCGACTTCCCCCACACCGACTCATCCGGCGCCTCCCACTCCCCCACCAATCCCCCTGCCCCCTTCACCCACCGACCAGAGCCGGCATTCAACCACCCACCACCGACACCACCCAGCCCCCAGCTAAAGTGACCAACATGCAGCACCACCCCCTGCAATGCAGCCCCTCCCTCAAGGCAAAGAACGAGCAAAGCCCCTCCTGAGCCCCAGGTCAGAAAGG # Right flank : GGACCACGTGGCGCGACCTGGACGTCGTTCCTGTCGATGGGGTGTTGGGAGGGCTGGCGCGCTAGGGCCCTGCCTTGCCGGTCTAATGTTTCAGACCTCGATGTACGCGACGACGACCACGGTGCGCAGTGCTGTGATCCAGTACAGGAGGCGTACGTGTTCGATCTCGTCGGTGTACTGGCGCAGGTGGGGGTTGGTGGCGTCGCCGGGCAGGGGTTCGCCGATGTAGGGGTCGACGGAGATGACGACCAGGGCGCGGTCCAGGGCGTGGAGGTCTGCCTCGCTGGTGATGGTTTCCAGTTGCTTGGCGGCGGTGTCGGAGAAGGTGATCCGGGCGCGGTGTGGGCTGTGCTGTCGGGTCATCAGGCGACGGCGGGGCGTTGGCGGGTGAGTCGGGCGAGGTGGGTTTCGCGGAGTTCTTCCCACGGTGTGCAGTGCTCGACGGAGGGCAGGCCGTTGGTGGCGATGTCTTCGAGGACGGCGGCGAGGTGGTCGGCGTT # Questionable array : NO Score: 4.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.04, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [26-52] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //