Array 1 37381-39089 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUGU010000025.1 Pseudomonas aeruginosa strain BOR21 ctg_BOR21_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37381 28 100.0 32 ............................ TTGGAAACAGGGCTGCTTTGGATGTACCCAAG 37441 28 100.0 32 ............................ TCTTCGCCGCGCTGGATTCGAAGGAGCGCCGC 37501 28 100.0 32 ............................ ATGTAGCCCAGCCCCAACGGCAGATCGCCAAC 37561 28 100.0 32 ............................ GATCACTCCCCGCTGCGCATGCAGCGTTCCCC 37621 28 100.0 32 ............................ TGAGAGATCGGGCGCTTTGGGATGTGACCAAC 37681 28 100.0 32 ............................ TGCTGGGCTTCTACAACCCGCGGGTGGTGCTG 37741 28 100.0 33 ............................ TTAAAGGTGCGTGATGGAATGGCTCGGCGCGAT 37802 28 100.0 32 ............................ TCAACGACCGCACAGTTACTCAGTACGTCGAC 37862 28 100.0 32 ............................ AAGCGGCAGGCATCGGGTGCTCAGGCATCTGA 37922 28 100.0 32 ............................ ACTCTGAATGCAGGCGCGAAAGCGCCTCACCC 37982 28 100.0 32 ............................ TCGAAGAAATCACCATCAACGCGTAGGAGAAC 38042 28 100.0 32 ............................ GGTAGTACTGGCCGCGATCACGGTGCCGGACG 38102 28 100.0 32 ............................ AGCACTTCGGACTCCGACATGGCCGTGATGGA 38162 28 100.0 32 ............................ GAGGGGCCGTATCGACGGTGATTGATGCGACA 38222 28 100.0 32 ............................ AGCAAGGCATCCGGAAACGGGCCTTGGGTCAC 38282 28 100.0 32 ............................ ATCGCCGCCACCGTCGCCGCCATCACCATCCC 38342 28 100.0 32 ............................ TATACCCGACTTTTCAGCCCCGCCGCCCTCGC 38402 28 100.0 32 ............................ TGACGGGCCGATTTATGAATCAGCCCCCTTTC 38462 28 100.0 32 ............................ TGGGCGATCTTTTCGAGGTGGTAAGTATGCGC 38522 28 100.0 32 ............................ TAGAGGGCGACCTAGAGCTTGCGGCGCAACAC 38582 28 100.0 32 ............................ CGCACGGGGGACGAGTTCGCAGCGCATTCGCG 38642 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 38702 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 38762 28 100.0 32 ............................ AAGAGGATGACGGTGAGCCGTGCCCGGAATGC 38822 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 38882 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 38942 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCT 39002 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39062 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48233-47605 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUGU010000025.1 Pseudomonas aeruginosa strain BOR21 ctg_BOR21_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48232 28 100.0 32 ............................ GCCACAATTCGTCGAGGACCAGGACCGAACCA 48172 28 100.0 32 ............................ ACGCCGAGGAAGCCAACGAAGCCGCCAGCGAA 48112 28 100.0 32 ............................ AGCAACGTGGCCCAGCTCGCCAACTGATCGAG 48052 28 100.0 32 ............................ ATGCGCACGCGGGCCTTGGTCAAAGCTCCCCC 47992 28 100.0 32 ............................ AACTTCCGGCCAGGCCGAGGGCGACACTTACA 47932 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 47872 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 47812 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 47752 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 47692 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 47632 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //