Array 1 164123-162629 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIN01000002.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 1588 NODE_2_length_606886_cov_58.1552, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164122 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 164061 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 164000 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 163939 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 163878 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 163817 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 163756 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 163695 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 163634 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 163573 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 163512 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 163451 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 163390 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 163329 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 163268 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 163207 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 163146 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 163085 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 163024 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 162963 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 162902 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 162841 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 162780 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 162719 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 162658 29 100.0 0 ............................. | A [162631] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181692-180687 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIN01000002.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 1588 NODE_2_length_606886_cov_58.1552, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181691 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 181630 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 181569 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 181508 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 181447 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 181386 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 181325 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 181263 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 181202 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 181141 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 181080 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 181019 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 180958 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 180897 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 180836 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 180775 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 180714 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //