Array 1 10892-10211 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MDQI01000013.1 Listeria monocytogenes strain C5 contig000013, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	=============================	======================================	==================
     10891	    29	 100.0	    36	.............................	AGTATTTACTTAGACAAACGCGCTCAAATTGAGCAT  	
     10826	    29	  96.6	    37	................T............	AGCGCAACAGGTGCCATATACAAACTGCCTTTTTTTC 	
     10760	    29	 100.0	    37	.............................	GAACCAGTAAGCATCATATTTTTATGAATTGCTTTTA 	
     10694	    29	 100.0	    36	.............................	GAATTATTAGAAAAAATGAAGCAACAAGGTATTGAA  	
     10629	    29	 100.0	    36	.............................	TTTTACATGGGAGTCAAAAGAGCAACTTAATATACT  	
     10564	    29	  96.6	    38	................T............	TTATAAAAGTACGCTTTAAATTTTTTCATGTTAACACT	
     10497	    29	  96.6	    34	................T............	GTTGGTAGGTTTAACCAAAGATGATCACCATGTC    	
     10434	    29	 100.0	    34	.............................	ATGTCCCACTGCTCAATTTTTAACGGGACTCCAG    	
     10371	    29	  96.6	    37	................A............	TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 	
     10305	    29	  75.9	    36	......T.C.A.C...CA...T.......	GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC  	G [10281]
     10239	    29	  79.3	     0	......A..T....AGA......A.....	|                                     	
==========	======	======	======	=============================	======================================	==================
        11	    29	  94.7	    36	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                      	       

# Left flank :   GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATTTCTATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTATTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGGCAGAAAGTTGTAAGTGGTTGGGGTGGAAGAATTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG
# Right flank :  GAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTCTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT

# Questionable array : NO	 Score: 5.79
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   GTTTTAGTTACTTATTTTGAAATGTAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [15-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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