Array 1 1876-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJXC01000061.1 Empedobacter brevis NBRC 14943 = ATCC 43319 strain NBRC 14943 sequence61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================ =============================== ================== 1875 48 100.0 30 ................................................ CAATGGTTGTTGAGCATTTTGTACAATCAC 1797 48 100.0 30 ................................................ TTATTCCAATAATCAAATAATTCAAAATCT 1719 48 100.0 30 ................................................ TAGCTTCGATAGGTATAAATAAGCCGTCTA 1641 48 100.0 30 ................................................ GAGTAGTAGCAAAATTATTTGAGAATGATT 1563 48 100.0 30 ................................................ CTTCCCATTTAATGACGAGCAATGTTATTT 1485 48 100.0 30 ................................................ CCCCTTGTTACGTTTACATTCGTTTGGTAG 1407 48 100.0 30 ................................................ TGTTAATCCTAAATTACGATACAAATAAAA 1329 48 100.0 30 ................................................ CTTCTAAAACAGTACCTTTTTTCAGGTATT 1251 48 100.0 30 ................................................ TATGATTTACTTGTAAATATTTGCCCAGGA 1173 48 100.0 30 ................................................ TTTGCTTCATTAGATCGCGCTATCACACAA 1095 48 100.0 31 ................................................ TAGCAAACGAAACAGCCCGCAGAAGAATCGG 1016 48 97.9 30 T............................................... TTGTTTTGGTTTGTTTTTGTAGAGGGCTTT 938 48 100.0 30 ................................................ TGGCCTGAACCTACGTTTAAACCATGTCCA 860 48 100.0 30 ................................................ TATCATTAATATCTTTTGTTCCAACTATTA 782 48 100.0 30 ................................................ TAAATAGCTACCATTTAATCCATCTCCATT 704 48 100.0 30 ................................................ ATACACTATTGGTAGTCCTGCGAATACAAC 626 48 100.0 31 ................................................ GAAGATAAGAATACAATTTTGTATGCAGTCG 547 48 100.0 30 ................................................ AGATAACAATTTCTTTTCATTTTCTATTTT 469 48 100.0 30 ................................................ CTTATCATTGTTCTCATCTGCAATTCTGTA 391 48 100.0 30 ................................................ AAATTTGGCTACTGTTACGGACTTACGCCG 313 48 100.0 30 ................................................ CCCTTTTGGTTTTTGATTTGCTAATTCTTC 235 48 100.0 30 ................................................ TACCATAACCTAATTTACATTTAATACATC 157 48 100.0 30 ................................................ TAGATTGGAATGATTCATATATACTTGAAA 79 48 100.0 0 ................................................ | ========== ====== ====== ====== ================================================ =============================== ================== 24 48 99.9 30 GTTGTAACTACTTACGTAAAATTACTAAAAGTGAAAGGAACTCACAAC # Left flank : GGAAACAAAAAAGCAAAGAAGTCAAGCTACTCGTTTTAGAAAAGAGTTGATCGACGATGGATTTACTATGTTTCAATTTTCGATTTATTTGAGACATTGTCCAAGCAAAGAAAATGCAGAGGTACATATAAGACGAACAAAATCTAAATTGCCTGAATTTGGTAAAGTTGGAATAATTTGTATTACGGATAAACAATTTGGACAAATGGAAATATTTTTTTCCAAAAAAGAAACCGATTTACCAACAGGTCCACAACAATTAGAGTTATTTTAGGAATAAAAAAATCCGATAGAAAACTCAACTTCTATCGGATTTTACTTTTTTTCTCATTTCTAAATTTCATCTCAAACCCTTTTATATTGAGGACTTTTAAAATGA # Right flank : CGCCATAATTAGGGGATTGGAATTGGTTCTAG # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:-0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTACTTACGTAAAATTACTAAAAGTGAAAGGAACTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.75%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.00,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 32-1028 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJXC01000070.1 Empedobacter brevis NBRC 14943 = ATCC 43319 strain NBRC 14943 sequence70, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================== ================== 32 49 100.0 30 ................................................. ATGATGGAGAAACAAACGCAGGGACATTAG 111 49 100.0 30 ................................................. TGGAAATATTGACAGGCATTTAGAGTGGTC 190 49 100.0 30 ................................................. TAATGGAGTTACATGGAGAAAATCAGATGG 269 49 100.0 30 ................................................. CAACTCAAAAGGAGAATTGTCTGTACAATA 348 49 100.0 30 ................................................. CAAATTGGAATGCGACAATCGTAATCCCCT 427 49 100.0 30 ................................................. TTTTAAACTTTTTTGTTTTGACTTTAAAGG 506 49 100.0 30 ................................................. TATATCAAATGTATCTGTTTGTGCTACTGC 585 49 100.0 30 ................................................. AGCAAATCGTCCTATAAAACCAAAGTTTTA 664 49 100.0 30 ................................................. TAGAAGTGCTATCTTAAACTCTATGCAGAT 743 49 100.0 30 ................................................. TTTTTGCGTTAAGTCAAAAGCTGTAATTGA 822 49 100.0 30 ................................................. TCATCAACTTTATTCATTCGCAATATGATA 901 49 100.0 30 ................................................. GTTCATTGCTGTTGAAGTAACTTCGACAGA 980 49 100.0 0 ................................................. | ========== ====== ====== ====== ================================================= ============================== ================== 13 49 100.0 30 GTTGTGAATTGATTTCAAATCTTGGTATATTTATCAAAGTATTTACAAC # Left flank : CTAGACACTCCTGGTGCATACCCGGGGTTAGG # Right flank : CTCATTTAACAAACCATTATTATAAAGGGTTTGAGAAGAAATTTAGAAATGAAAAAAAAAGTAAAATCCGATAGAAGTTGAGTTTTCTATCGGATTTTTTTATTCCTAAAATAATTCTAATTGTTGTGGACCTGTTGGTAAATCGGTTTCTTTTTTGGAGAAAAATATTTCCATTTGTCCAAATTGTTTATCTGTAATACAAATAATTCCTACTTTCCCAAATTCAGGTAATTTAGATTTGGTTCGTTTTATATGTACCTCAGCATTTTCTCTACTTGGACAATGTCTCAAATAAATCGAAAACTGAAACATAGTAAATCCATCGTCAATCAACTCTTTTCTAAAGCGAGTTGCCTGACTTCTTTGCTTTTTTGTTTCT # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:-0.5, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGATTTCAAATCTTGGTATATTTATCAAAGTATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.51%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 32-870 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJXC01000078.1 Empedobacter brevis NBRC 14943 = ATCC 43319 strain NBRC 14943 sequence78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================== ================== 32 49 100.0 30 ................................................. ATATTGAATTACCAAAATCAATAAAGTACA 111 49 100.0 30 ................................................. AAAAGTAGTTGAAAAGTCACGTGCTGACGG 190 49 100.0 30 ................................................. ACGTCCTACTGTTTTTGTAAATAGATTAAA 269 49 100.0 30 ................................................. GTTAATAATTGTATTCGTTGTGCTTCTATA 348 49 100.0 30 ................................................. ATAAATTAAATGATGTTCGTCAAGTATTAG 427 49 100.0 30 ................................................. TTAGCAAAGCATCGTATCTATTGTTTTTAT 506 49 100.0 30 ................................................. AAGAGATGCTAGAGGTATGGAAGTTGAGAA 585 49 100.0 30 ................................................. TCCACTTCCTTTGGTCAAACCACCGTCAAA 664 49 100.0 30 ................................................. CCAACCGCTTTCATTTACGTTAATAACTCT 743 49 100.0 30 ................................................. TTTTAACAAGGTTTATGATGATAAAAATCG 822 49 100.0 0 ................................................. | ========== ====== ====== ====== ================================================= ============================== ================== 11 49 100.0 30 GTTGTGAATTGATTTCAAATCTTGGTATATTTATCAAAGTATTTACAAC # Left flank : CGCTGTCCTAAAGGTATTAATTCAGTCCACGG # Right flank : AATATTATCGTTAGGTGCTACACCTATAAGG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:-0.5, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGATTTCAAATCTTGGTATATTTATCAAAGTATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.51%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //