Array 1 48-626 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEUV01000022.1 Escherichia coli strain KCJK8519 NODE_22_length_48887_cov_5.564459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 109 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 170 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 231 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 292 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 353 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 415 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 476 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 537 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 598 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGTG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1299-172 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEUV01000081.1 Escherichia coli strain KCJK8519 NODE_81_length_22517_cov_5.530103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1298 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1237 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 1176 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1115 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 1054 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 993 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 932 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 871 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 810 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 749 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 688 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 627 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 566 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 505 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 444 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 383 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 322 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 261 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 200 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTTCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //