Array 1 15846-13992 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWKH010000026.1 Bifidobacterium longum subsp. infantis isolate LH_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 15845 33 100.0 35 ................................. ACCGGCGTCCTGATTCAGCGCCTCATCGGCCTGTA 15777 33 100.0 34 ................................. GGGTGGATATCTGTATCAGGGAACCAGTTTGTGT 15710 33 100.0 33 ................................. TGAGACTCTGTCGCATTTCCGGTAGGTTAAGAT 15644 33 100.0 35 ................................. ACGACGCCTCAAGGCTGTTGCGTGAGAATTGTCGG 15576 33 100.0 35 ................................. CACCTGCATTGCGCCGAAATTACTGAGGGAGGTTT 15508 33 100.0 35 ................................. GCCAACGCCGTCCTGTTCTGGACCGGCGAAGGCAG 15440 33 100.0 35 ................................. ACCGTCATCGACAACGACGGCATCCTGCACTGTGG 15372 33 100.0 34 ................................. CTTTATTTGAGTATCTAGCTGGGTGAGAATCTGA 15305 33 100.0 36 ................................. ATTCAGGCCTGCGATTACGTGAACGCGAACACCACG 15236 33 100.0 34 ................................. CTCCGGGCAGGTGCTGGACCGCACATACAATTCA 15169 33 100.0 35 ................................. CAATAGGTAAAATTAGACATTGCCATAAGATTCGT 15101 33 100.0 35 ................................. ATGACATACATGTCATTACGGTCGGACAGGACCGG 15033 33 100.0 33 ................................. ATCCGGGTCTGCCATATCAAACTCCTTGCAAGT 14967 33 100.0 33 ................................. AGCCAACCATCTGTCAAACTGGCGGCGAGCGCG 14901 33 100.0 35 ................................. CTCGCCATAGGGCAGATCGGTCCGGCCGCGAGGCT 14833 33 100.0 35 ................................. ACCGGCTGGGCCATGAAGCCCGCTCCCGGCGCCGG 14765 33 100.0 33 ................................. CCACTGCCGCCCGGCGTGAACACCGTCACCCTC 14699 33 100.0 34 ................................. CCACGCGGACATGCCGGCGACCGTGATGCAGGCC 14632 33 100.0 33 ................................. ACCGGCTGGGCCATGAAGCCCGCTCCCGGCGCC 14566 33 100.0 34 ................................. ACGCTGTCGGCGGTGGTGCTGACGACGCGAACCT 14499 33 100.0 35 ................................. ATGACCGACGAGCAGAAAACACAGATCGACCGGAT 14431 33 100.0 35 ................................. CTGTTTTGACGGTCCACGTCCACCTGCTCCGCGTA 14363 33 100.0 34 ................................. CAGCCCGTCGGCATCAAGTACATGCTGGATGGTG 14296 33 100.0 35 ................................. CACGACCAATCTCCTTCGCGACCCCGGGAGCAAAG 14228 33 100.0 35 ................................. ATGACCGACGAGCAGAAAACACAGATCGACCGGAT 14160 33 100.0 35 ................................. CTGTTTTGACGGTCCACGTCCACCTGCTCCGCGTA 14092 33 100.0 35 ................................. TTGACGGTGACGTTCTGCCCGTGCCAAGCGGTGCC 14024 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 28 33 100.0 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : TGCGGAACGTGGCCAAGATTTGCATGAGATACGGTCAACGCGTGCAGAACAGCGTCTTCGAGTGCTCCGTATCGCCGTCCGATTACCTGATTCTGAAGCATGATTTGGCGGCGGTTATGGATGAGTCGCAAGACAGTCTTCGGTACTACAACCTCGGGGCGAAGTATTCCTCGAAGATCGAATATCGAGGAAGGCAGCGACACATGCCTGTTGATGGCGTGATGATGCTTTGATGCCGGATTGGTGTGTGGCGTGTGGATATTGGTCGGTGCGAGCCCCAAGCTCTCATGAAGTACTGGGCTGTTCGCACCACGGTTGAGGACTTTTGAAGACGGTGTATGTTCTTCTTGCTGTTTGATAACTCAAGAGTGGATGATTTGCTGGTATTTCGATTCGGCAGATTTGCGTATCTGGGGAGATGCGAGTGGGTTGTACAGTACAATCGATGCTAAGGAGTGGTCGGAGTGTCCGTATCTTGGGATGCGAAGTCCATTCCCGCG # Right flank : GCCTTGTACGTGTTCGTGAACGTGGTCGGATTGTTTGTGTTCAATGTGAGGTGAGCCGAGTTACCGCGATGGTGTTGGCCGGGTTACCGGCAAGAAGTTGACCGTTTCATCGCCCCTTGGCGCAAAAGGGCGTCGGCCCGTTTCGTCCCGATTAGATTCCCTGGTTGGTAGTGGTTTTCCCAGGGGAGGAAAGGAACATGACGGTGTCGACGCCCGTGCGACAACATATCAGGATTCTCGACGCGCAGGGTGTTTCCTGGCGTCGGATAGCCAAGGAGGTCGGAGTGTCAAGGCAGACGGTCGGGAAGTACGCCGAATTGGAGGATTGCTCGCCCAAGCCGCCCGAACACGCGAAGGCGAAGTCGAAGCTGGACCCGTTCAAGCCGGTGATCGACAAGTGGTTGGAGTTGGACCGGTTGATGCCGCGCAAGCAGCGCCATACCGCGATGCGAGTCCGGCACCGGCTGCGGGACGAGCATGGCTACGAGGGCTCGTACCAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //