Array 1 999187-1001495 **** Predicted by CRISPRDetect 2.4 *** >NC_009376.1 Pyrobaculum arsenaticum DSM 13514, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================ ================== 999187 24 100.0 43 ........................ AACCCGCCAAGGCATTACTGGATCGCCGCCGTCGTTTTGACTA 999254 24 100.0 40 ........................ CGTATATGTGGAGCTCTGGGGGTATCCTGACCCCCTCTAT 999318 24 100.0 48 ........................ AGCAGGACGTGTCTAAACAGCTTGACAGAATTGCATCCTTGGCACAGC 999390 24 100.0 47 ........................ AGACGATGTAGTCTTGGCTTGGGCCGTCTTTATACACGCCGAAGCCG 999461 24 100.0 45 ........................ GTCATCACGAAGTATAGTATCAACCCGCCGGCTACTGCGATAACT 999530 24 100.0 42 ........................ TGCCGTACTACGGCAAAGCAATATACGTCGTTAAAGAGAACT 999596 24 100.0 42 ........................ AAGCTGTACATCGCCTCTGAGCCCAACGTCTTCTACGGCGAG 999662 24 100.0 44 ........................ TCATCATGGCCATAAACACGAAGAGCCACGGCGAGAAGCCCCAT 999730 24 100.0 45 ........................ GACGTTAACTGCTGAGTACACTTCACGCTCGTGCAACAGCTTAAG 999799 24 100.0 44 ........................ GCCAGAGACATTCGGCGTATTGTTGCGCAGGCTGGCGTCCTACT 999867 24 100.0 45 ........................ ACTAACGCAGCAATCACTATCACCACCGCGATTATTAGTATTGTT 999936 24 100.0 43 ........................ TTTGCACGGCGAATGTAGCTATCTGCCCGGCTGTTGTAATAAG 1000003 24 100.0 39 ........................ CTGCTGGGTCTGGGCGCATCTGTTGCGTTAACTACGTTG 1000066 24 100.0 43 ........................ CCAAAACCGTGAGGCCCGCCTCCAGTCTCCGTCTGGACTTTCT 1000133 24 100.0 46 ........................ AAAAGGTTTTGTACGGCGAGGCCACGTACTTCCACTTAAACATGGC 1000203 24 100.0 44 ........................ ATCTGAATACCGTGGCCGGCATCGATGCAGTTGACGACGACGAA 1000271 24 100.0 45 ........................ CAGCTCTCTTCTTTTTTCCCGCCCGCCTTTTTGCAAAAACTAAAT 1000340 24 100.0 42 ........................ GGAAGGCATGTGGCGAAGAGGATAAGTTTGACAGAGCTTGCT 1000406 24 100.0 43 ........................ ACATATGGAAGCGCCGAGAGGCCGAAGATGCGTCTCATGCAGG 1000473 24 100.0 42 ........................ GTTTTGATATCAAGCTCCGGCACTACATCAGTACAATACGTC 1000539 24 100.0 42 ........................ CGTAGTCGGCTGGGCGGTAGCCGGAGGAGGTCTGCACCACTG 1000605 24 100.0 40 ........................ CAGGTAGAGAAACAGCCTGAGGTGCGTCTGCCGGATGAGA 1000669 24 100.0 44 ........................ AGACATGTATATCTCAGACAGCTCCTTCTTAGCCACCGTCTGGA 1000737 24 100.0 43 ........................ CAGGCGCCCTGACGCCGGGAGTCTTCGCGCCGGTTTCGGAGAG 1000804 24 100.0 38 ........................ ACTCGTACACAACCTCGGCTGGGCTTGACATGTGGAGA 1000866 24 100.0 42 ........................ ATAAAAACTTTAACGAACCGAACCCCCGCCCTAAAGGGCGAG 1000932 24 100.0 42 ........................ ACACGTCGAAATGCGGCCCAACAGTTTTGCTCACCCTGCCAA 1000998 24 100.0 41 ........................ CCTGTCTTAAACGGCACCATGCCGGTGGCGATCCCCATCGC 1001063 24 100.0 46 ........................ TGTTGTAGCCCCCGACGCCCATATGGCTCCCGGTGCCGCCCGTCTT 1001133 24 100.0 46 ........................ GCGACATGGACATAAGCGACATGTACATCAGCACATACGCGAAGGG 1001203 24 100.0 39 ........................ TTGCTAAGGCGAGTCCTCTCTTCGTGTACTCCTCAACAT 1001266 24 100.0 44 ........................ GAACTGCTTGAGCCGGACGAGCCGCCGCCGGAGCCGCTTAATGT 1001334 24 100.0 43 ........................ AAGACGTCGATGGCGTATGGGAAAGGCGGCGGCTCTGCTACCT 1001401 24 100.0 47 ........................ CTCTGACATTATCCGCCACTTCCCTCTGGAGGCTGTTCAGGTGGCGG 1001472 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================ ================== 35 24 100.0 43 GAATCTCAAAAAGAGGATTGAAAG # Left flank : AGAAGACACACCCCCCTCCCCCCGCGCCCCCACAAGCTCCACAGACGGCTCCCCCGCACTCTCACCCAACACCCCAAGCAACCCAGCCAACACAAACAACTCATCCACAAAACACACAACACCCCAAATAAAAACAAACCCCCACAAACCCCGCCGGCCCCCCAACCCCCACACCCCACGCCCCCAGCTATATACCCTATATAAACTGCGGCGTTTATAAAACGTCGTGCAACAAAAGCTTTACTTTTGTCAATATTTCAACTCTCATCGGCGCAGGGCGTTTTTAAACGCCGAAAATCCAATTTATAAAACGCCGTGCAGGACAAAGCCGCAAGACGCCGCCGGAGGGCAAAAACACGCCCAAAGCCACCCGCCACAACACACCGACGCCGAACCCAGAACAAGACACAAAAAACAAACCCAAAGACAAGCCAGTCCGAAACCAAAACACACCCAAGAAAAACTTAAAAACCCACCAAAACAAACCCCCAGAAACCCCA # Right flank : GTCCGCCCCGAGCGCCGACCTTACGGCATCTTCTGCCTTGCCCAAATCGCCGCAACCGCCCCCGCAGAGGCCCCTCTTAAGGAGGACTAAGAGCATAGGAACCAAGGCTCCCCGACCTCCCCTTCCACAAGTCTTCCGTAGCCCGCCCTAACTTTGTAGTTCATGTCCTCTTTGCTAACTTTACTTTTCACCACTATGAAGCTTTTGGCTGGACTATTCAAGCACTTATTTCTCAACTTCTCCACGTAATCTGTTACATTACCTCTCGCCGTCACTTCAACGGCTACAACATGCCGCCCCTTGTCAAGACATAGCAGATCAGGTTTAGGATGTTGTTCAGAATCTAGATGCTGGACGCCGCAAATGCACGATTTTTTCTCTGAGCTATATCCTTGTTCTTGCAACATATTCCATTATACTCCTCGGTATCATATATACAACAACATAGAAAGCTTAGCTGTTTAAATTGAATATAAAATGTACATTTAACGTCGTCACGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 1012951-1018930 **** Predicted by CRISPRDetect 2.4 *** >NC_009376.1 Pyrobaculum arsenaticum DSM 13514, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================================= ================== 1012951 24 100.0 42 ........................ AGTGGCGATTATAACTCTGCGCAACCCAGGCCACTATACATA 1013017 24 100.0 49 ........................ CAGTACTGCAATGCGGCTATAGGACGATAATACTCGACGAGGCCCATTG 1013090 24 100.0 43 ........................ TAAGTTGTGGCTGACGACTGGGGCCAGGGAGTATGAGCGTCCA 1013157 24 100.0 43 ........................ GCCGGGGACAAAAGCATACGTACGCCGAGAGTTACAAAAGCGT 1013224 24 100.0 46 ........................ TATGTTGCCTGCCACGTGGCAAGAATTCCTCGGGGGAGACTGACAA 1013294 24 100.0 39 ........................ AGTCTTTAAACATCCAGGGCAGGCGCGCAATTGATATAC 1013357 24 100.0 42 ........................ CTTCCTCACGTCGTCTGTGTTCAGAATACGTTTGAGTATTTC 1013423 24 100.0 40 ........................ GTTGTGCTCGGGGACGCTTTCAAGCCGCGCGTCTAATACA 1013487 24 100.0 39 ........................ GGAAGATCTTAAGCGCATCCGTCGTTGCGCCGGGACTTC 1013550 24 100.0 42 ........................ ATCCGGCGTGGGGAAGACGACGCTTGCGCTGAACTTAGTGTC 1013616 24 100.0 49 ........................ CTGTTGGGTTGCTCAGACAGAGCTATTCCAGCCGCCCTTAGGGCGGCTA 1013689 24 100.0 42 ........................ GCAACCTCCTTTGCGCCCATGCCACTAAGTCGCTTATGTTGA 1013755 24 100.0 44 ........................ CTGCGTCTTAGATCCCGCCACGGGCCTGCCTCTCTCGTCTAGCT 1013823 24 100.0 46 ........................ TCGTAGAGACGGCGTGTGTAGAGGCATGGCTCAGAACTGTAATACT 1013893 24 100.0 42 ........................ GGCGGCTACCACAGCGGCTAGAAAAGCCGACGGCAAGGCCAG 1013959 24 100.0 43 ........................ TATGCCACTTGTGCCGCCATGGTGCCGTAGGCGATAAATCCGC 1014026 24 100.0 42 ........................ GGCACGGTACGTAGGCGAGAACTATAAAATGGCCTACTGGCC 1014092 24 100.0 41 ........................ CTACAATCTCTAACGTCTCCCCACAGTAGGGACACGATACT 1014157 24 100.0 48 ........................ TCTCTAACCAAACTGTGTACGAGAATCTTGACGGCCAGCCTCCCCAAT 1014229 24 100.0 43 ........................ TCTACGTACACTATGCCGACGCAGTGTTGGTATCTGTTACTCG 1014296 24 100.0 41 ........................ AACACGAGGCGGCTAAGCGGATGGCCCTCGAGGGAGAGATA 1014361 24 100.0 45 ........................ CCTTACCACATGCTCCTCTGGGACGCATAACGATGTCATTGGCAA 1014430 24 100.0 43 ........................ CAGTAACGCGTATAGTCGTTGCGCGAGCCTACTTTGTTCGCCT 1014497 24 100.0 45 ........................ ACTGCAACGCGACGGAGACGCGACGCAACTATGACAAGTTCAAGA 1014566 24 100.0 42 ........................ TTACACAAGCGTTAGTGGATGTATTGGTGAGCAAGTGCGATA 1014632 24 100.0 42 ........................ AATGCTTAAGGGCCTGGGACCCCGACCGGGGTCCCGGGGCCA 1014698 24 100.0 45 ........................ TGCTTGATGACGTCGGGAGGCGGATGGCCAGTTACGCCAATACTA 1014767 24 100.0 43 ........................ ATAATAGATACTTAGAAGTAAAATATCCAAACGGCATTAGGGC 1014834 24 100.0 40 ........................ TGCGCAGTTTCCTCTTGAACCCGCCGTACAGTAAGCCATG 1014898 24 100.0 41 ........................ GGTTTCACAGACGCACGCGGTGACATGCGCAAATACAGACT 1014963 24 100.0 39 ........................ GCAAAGAACCGTGCAAGATTTCTCCTGGCACCGGGGTCA 1015026 24 100.0 41 ........................ ACCGCTTTAGCGGCCTTGATTAAATCTTCGTCTGAGAGAAG 1015091 24 100.0 44 ........................ AACAAACCCCACAAATAGACAAGCGGGCAATCATGGCAATTATC 1015159 24 100.0 43 ........................ CAGTTACGCCTTGTCCGCTTATTCTGTGGGCGATCATGTGGAA 1015226 24 100.0 41 ........................ TGTCTTCATATATTGTGCAGTCCTCCCCTTCGCACTGCACT 1015291 24 100.0 41 ........................ AGCCGACTACGTGGTGAGACAACAATCCAGCGACCGCGACT 1015356 24 100.0 40 ........................ ACGTTGCTTCCCCTCCGATCTTCCCCCACGACCTGGGGGA 1015420 24 100.0 46 ........................ GCGCATGTATATCACGTCTTTTTTCTTGGCCCCCCCCTTCCGTTGC 1015490 24 100.0 43 ........................ AAGGCCGCGCTGGGCCACAGCCAAGGCAGTATCGTGTAGAGGA 1015557 24 100.0 42 ........................ GGGATCCCAGTCGGGGCCCTGGGGCCAAAGAACAGGCAAAGT 1015623 24 100.0 44 ........................ CGTGTCCAGATACCTAGCCGAAACACTCTGCGGCCCGTACATAT 1015691 24 100.0 42 ........................ GCTTTGCGCACTAAAGAGCTGTCGGACGACGTCATAGTTTTG 1015757 24 100.0 37 ........................ GTAGATATTCTGAGTCGGATAATTTAAAGTCCGGCCT 1015818 24 100.0 41 ........................ TCTACGAGGACGTAGCGCTCTCCTTCCTGCCTGACAAAGAC 1015883 24 100.0 41 ........................ GTCACGCGGTACAAATGCACGCATGAAGGCGTAGACGTCTT 1015948 24 100.0 43 ........................ TAAGCCATAATTGTGCAAACATCTGCATACGCGTAACAGCTTG 1016015 24 100.0 37 ........................ CTTGATACTTCCTTATCGTGTCATAGCTACGACCTAG 1016076 24 95.8 41 A....................... GCCTTATTGTTAATCCAAGGCCGAATTTGTCGAATACAACT 1016141 24 100.0 44 ........................ CCACGTACGAGTTCGGCGGCGCGTGCCGCGGCGGCTCCTTGCCC 1016209 24 100.0 41 ........................ ACGTGCGCCTATTTGCAGACCCGGTGCCCGTAGAGGCGAAT 1016274 24 100.0 40 ........................ TCTTGCACTGCCTCGGCCAGCAAGCGCGCCAGCATGTGCG 1016338 24 100.0 43 ........................ CTTAGCACGTGAAGCTGTGATTGCGCTCATTACTGCTGGGAAT 1016405 24 100.0 54 ........................ CTATAATATCAACTATCTTTATCCTATCCTCACCACTACGATAATAGTAAATAG 1016483 24 100.0 46 ........................ CGCATCTCACTACAACGCCGACGTAGTCGGTTTGGCGCTGTTACTC 1016553 24 100.0 42 ........................ GCTGAGCCGGGGAGCACGACAGCTGTCGTAGCCACCGCCTTA 1016619 24 100.0 46 ........................ CTTGTGGAGAGGTACCTGCGCGCAATCGGCGACGAGCTGATTATGC 1016689 24 100.0 42 ........................ CTTTTCTCTCTTTTGCCTTTTTCGGCGCGAGAGTTGAACTAA 1016755 24 100.0 43 ........................ ATCTTATTATCACGTGTCGTTACTAATCAGCACGATGATGGCG 1016822 24 100.0 44 ........................ CACCTCTTCCAGCGACCTCTTCACGTCGAGGTGGGCTTGTCTAC 1016890 24 100.0 40 ........................ TTTTTCTTTTCTTTTTCAGGTGAGGGAACCGAGTTGGCGT 1016954 24 100.0 46 ........................ GCTTTCGCCTGATGAGACGCCTGAACGCGGCCAGTACGTCTCGGGC 1017024 24 100.0 46 ........................ ACAACGGCTGGGTACGGAATACCGCTCAGCAAAAGGCTGAGCATAG 1017094 24 100.0 44 ........................ ATTTAAACAGATGCTTACTGCCTATACATGTCGACCGGGAAAAT 1017162 24 100.0 43 ........................ TGCCGTATACAAAGCACAGCTACTACGCAGACGTGCTTTACGA 1017229 24 100.0 47 ........................ TTAAGCAGTAGCGTGGTAAGCGCTACGTTGCCCGCAAGGCCTAACAG 1017300 24 100.0 55 ........................ GGTGTATACAGCCTTTGTCAAGGCTGTATACGAGGTGGTTGGCAAAACTCGCGCA 1017379 24 100.0 44 ........................ GCAGAAGTACATGACGTTGTCATATATTTCTCCCGCTATTTCTT 1017447 24 100.0 36 ........................ ACTTGTAGAGGGCTCTCCCCAAGTCGTAGAGGAGCC 1017507 24 100.0 42 ........................ TTAACATTTTTTCATTAATCATATTTACGTAAAATTCATTAT 1017573 24 100.0 45 ........................ GGTAGTAACATTTTGTCAAACTCGCTATCGGCTTCTTTTTCACGA 1017642 24 100.0 43 ........................ CCACTCTTCTTCGCTTAATGAGTCTATTTCTTTTAACACGTCT 1017709 24 100.0 38 ........................ TTGGAATAGACTCCTCCAACGCTAGCTGAGCTCTGCAT 1017771 24 100.0 41 ........................ CAGGCCGCGGCGTGCACAGAGGGGGGCACTGAGAAGACGCC 1017836 24 100.0 47 ........................ CTTGTCGCACATATCGCTTAGTGTGTAGAACTGGCATACCTGGTAGT 1017907 24 100.0 50 ........................ ACTAAGTGGGGTCTACGGCTGGGGTTTTGGCACCCCCACATTATAAATCT 1017981 24 100.0 41 ........................ ATGCTGTAAAGCGCCAGCGCTCTGCATGTGCACCTAATAAC 1018046 24 100.0 46 ........................ CTTATTGTGTTTGGGCTGGATATTGGACATGGCTGTGCGTATGCAA 1018116 24 100.0 41 ........................ TTTAAGAGGAGCGTTGTCAACGCCACATTTCCGCCCAAACC 1018181 24 100.0 41 ........................ TGCCAGCCGTGGAGCTACGCCACCACATTCTCAAGAGACAA 1018246 24 100.0 42 ........................ TTGGTTTATAAGCCGCCTCAATAAGGAGGTTGTAATCATGCC 1018312 24 100.0 44 ........................ AAGAGCTGTTACGCAGTATAGGCTGTCGGGGGGCGAAGTGGCCA 1018380 24 100.0 43 ........................ GAGGCCCAGTAGCGGCATAAGTTTGTCAAGCGCTTTTGATACG 1018447 24 100.0 40 ........................ TGCCGTTACGCGCCTCGGGTATTGCGCGCATCAACGCATT 1018511 24 100.0 42 ........................ GCTCATACGCGTATCTATACACCGCCTGCAGTGCGGCCTGTA 1018577 24 100.0 40 ........................ ACACTACGGCTTTTAACGGTTTTTAGTTTTTCTAGCCAAT 1018641 24 100.0 42 ........................ CGTATACTCACCACTTTATATTCACCCATAGAAATCTAAACA 1018707 24 100.0 44 ........................ AAAATATCACACTGGTGACCCTCTCTAGTACAGGGAGTGGCGCC 1018775 24 100.0 42 ........................ TTCTTCGACAGGCAGGGAGAGGAGAGGTACGCGCTGTACAAG 1018841 24 100.0 42 ........................ ATTAGTATTTGGTCTAGCAGGTCTTTTATTTGTAGATATTCT 1018907 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================================= ================== 90 24 100.0 43 GAATCTCAAAAAGAGGATTGAAAG # Left flank : AGACAGCTTAGCAGACACCCACTCCTCCCAGCTTGCTGGTGATCTCTCGACCTATCGGCCAGACAGCTTAGCAGACACCCACCGAAGAACTCGCCTAACAGCCCTCTCCACAGCACACCCCAGCCGGGCTAAGACGCCTCGGCACCGCCTAGCTAAGGAACAACAATCACCCAAACCCTCGTCGTAACTATATACCCTATATAAACTGCGGCGTTTATAAAACGTCGTGCAACAAAAGCTTTACTTTTGTCAATATTTCAACTCTCATCGGCGCAGGGCGTTTTTAAACGCCGAAAATCCAATTTATAAAACGCCGTGCAGGACAAAGCCGCAAGACGCCGCCGGAGGGCAAAAACACGCCCAAAGCCACCCGCCACAACACACCGACGCCGAACCCAGAACAAGACACAAAAAACAAACCCAAAGACAAGCCAGTCCGAAACCAAAACACACCCAAGAAAAACTTAAAAACCCACCAAAACAAACCCCCAGAAACCCCA # Right flank : GGCTCGTTGTATGGATATGTAAAATATATACTTTGTAGATGGGGGGTGTGAAAAAGGGGGATTAGATTTTTTCGACTTTGGTCTGGGTGAAGCCGCAGATTTTGCGGTACCAGCAGCTGGGGCATTTGGCTGGGTGGTAGCGGGGGTCTGGGGTCCAGCCGGCCATCATGCGGCGTATCTGGGCGGCGGTGTGCTTCACCAGTTCGGCGAGGTCGCGTGTCAGGGGGATGGCCTTTACCTCGCCCGTCTCGGCGTAGTAGATGTACGCGCCGGGTGAGGCCTTGCCGTACTGGGCCTGGGCGGCTAGGGCGTAGGCGGCGGCTTGGGCTTTGTGGTGGAGGGGCACCGCCCTGCCGGGCTTGGACAGCTTCACCTCGAGGGGGGCGGGCCTTCCCCGTATGAAGAGGAGGGCGTCTACAACGCCGCAGATACCGGCGCCGCTTAGCCGCGGGGCGTGCACCACCTGCTCGGCGCCTAGGGCCTTGGCCACGGCTTCCACA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 1308105-1307876 **** Predicted by CRISPRDetect 2.4 *** >NC_009376.1 Pyrobaculum arsenaticum DSM 13514, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 1308104 24 100.0 44 ........................ GCGGCTCTCTCCTTCGGCGCCTCCAATGGCGGTCTGACAGTCTC 1308036 24 100.0 47 ........................ ATGATATCATCACTAACGCCGTGTGGAATAACTACATCTGCCTTAGT 1307965 24 100.0 42 ........................ GATCTCACCGCGTACTCCGCCAGGGCTTGGGCCATGGCGTTC 1307899 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =============================================== ================== 4 24 100.0 45 GAATCTCAAAAAGAGGATTGAAAG # Left flank : TTTTCCCCCTTTTTCGCGCTAACTTCCTGGCTGGGCCAGAAAGGCGGAAACGTTGAGGAAAGGGGAGAAACGGAGGGGTCGACGGAGAGAGGTTCAATACTAGACTCAAACGGCAGCTTGGCTTCAATACACTTCACACGGCGTCGTTGATTCAATGTCAAAAACCCCTCGCCGAGGGGGTTCAACATCTAAACGGCAAAGTTCAACAGTCGGCGTTTATAAAACGTCGTGTATCTTTCTCTTTACAGATGTCTATATTTCAACTCCTTTGGCATGTTAAAATTTGTAAAGGGGGATCCAATTTATAAAACGTCGTGCAGAAATACGGTGCCCGGCGGCGCCGAGGGGTTAAACACGGCATTCAACTCCCAGCTCCACAGCCAAACTGCCGGCAAAGAACAAAACTGCTCTAAAACCACCACGAGGGAAAACCGCTCCCAAAACAAAACCAAAAGAAAAAAAACTTAAAAACCCACAAAAACAAAACACCAGAACCCCCA # Right flank : GTTCAACACCTGAGGACAGGGCGCCACCGCCCGACCGGTGTCAGATACTGGGAAGAGAGAAATCAAAATTGGGAGATGTGCAGGAAAGAGTCATGAGGGAGCCACTGCCCCCCACCCCGCCCCGGGCAGGGCGGGGCGGCCCTGGCGCGCGGGCCGAAGGCGGGGAGAGCCCGCCGAGGGGGTTGCCGACGCCCCGGGCGCGGCCCGCCCCGGAAGCCTCTGGCGATCCGGGGCCCCGTGTCCCCCGGGGCGCCCGGGGGGGATAGGGGACGTGCATAGTGCCGTAGCGGAGGGCTTGGTCAAGGGCAATCCACAGCTTCTCCTCCGACGGGACAGAGAGGTGTAGCAACTGGCCGTCGAGGGGTGCCCATATTTCTCTAGCCCCCCTCTCAATTACCACCACCTGCATCCAAGGAGGCACCATGTATAGCAACTGGTTCAGCTGCGTGGTCTTGCCGGTGCCCATGGCGCCGGAGAACACCACACTGCCCCTAGTCTCC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: R [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.27 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], //