Array 1 422196-423688 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYST01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_4365 NODE_2_length_603430_cov_3.3502, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 422196 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 422257 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 422318 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 422379 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 422440 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 422501 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 422562 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 422623 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 422684 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 422745 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 422806 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 422867 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 422928 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 422989 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 423050 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 423111 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 423173 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 423234 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 423295 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 423356 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 423417 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 423478 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 423539 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 423600 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 423661 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 439820-441723 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYST01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_4365 NODE_2_length_603430_cov_3.3502, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 439820 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 439881 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 439942 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 440003 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 440064 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 440125 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 440186 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 440248 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 440309 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 440370 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 440431 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 440492 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 440553 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 440614 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 440675 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 440736 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 440797 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 440858 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 440919 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 440980 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 441042 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 441145 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 441206 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 441267 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 441328 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 441389 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 441450 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 441511 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 441572 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 441633 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 441694 29 96.6 0 A............................ | A [441720] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //